Showing : cancer • reset
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Job: Research Fellow in Prostate Cancer Proteomics (Bioinformatics/Stats/Data Analysis) - University of St Andrews
Multiomics Proteomics Cancer Statistics Bioinformatics
16 days ago Andy Lynch ▴ 120
0
votes
0
replies
66
views
Calculating tumour purity having only CNA data
PureCN CNA purity cancer
6 weeks ago JAcky • 0
0
votes
0
replies
77
views
Job: Postdoc position - Genetic epi/statistical genetics
GWAS cancer biomarkers PRS
9 weeks ago Sarah • 0
0
votes
1
reply
775
views
An ESR essay about software design, and how it applies to Bioconductor
GUI Cancer GUI Cancer
written 18.5 years ago by ▴ 810
1
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0
replies
149
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Job: PhD Positions in Computational Research, Data Science and Artificial Intelligence at the German Cancer Research Center (DKFZ)
phd cancer genomics proteomics bioinformatics
3 months ago DKFZ International PhD Program ▴ 10
0
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1
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9.0k
views
heatmap.2 - change column & row locations; angle / rotate
Cancer Cancer
updated 5 months ago by • 0 • written 8.8 years ago by ▴ 10
0
votes
1
reply
238
views
WGCNA
Cancer
updated 8 months ago by ▴ 390 • written 8 months ago by • 0
0
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0
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344
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Job: Computational Biology Lab Head, Brain Cancer Centre, Melbourne, Australia
australia cancer wehi
15 months ago • updated 11 months ago Gordon Smyth 46k
0
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0
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316
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Job: Cancer Bioinformatician @ University of East Anglia - Norwich Medical School, UK
cancer postdoc biomarkers Biobase
16 months ago Daniel Brewer ▴ 90
0
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0
replies
410
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Job: Senior Research Associate in Bioinformatics @ University of East Anglia - Norwich Medical School, UK
Biobase bioinformatics biomarkers cancer
20 months ago Daniel Brewer ▴ 90
0
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0
replies
447
views
Job: Postdoctoral Data Scientist @ Oxford University, UK
Cancer CancerSubtypes postdoc
21 months ago Daniel Brewer ▴ 90
2
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13
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558
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Sample size imbalance in a multi-regional experiment
deseq2 cancer
updated 22 months ago by 37k • written 22 months ago by • 0
4
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7
replies
702
views
Limma sample groups
microarray limma affy cancer
updated 22 months ago by 46k • written 22 months ago by • 0
0
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5
replies
673
views
TCGA: to extract clinical data from barcode
cancer TCGAbiolinks
updated 23 months ago by 3.6k • written 23 months ago by ▴ 10
1
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5
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733
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TCGA: clinical data and expression data
microarray annotation cancer
updated 23 months ago by 3.6k • written 23 months ago by • 0
0
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5
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644
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Differential expression analysis of multiple RNA-seq datasets using DESeq2
deseq2 cancer
updated 23 months ago by 37k • written 23 months ago by • 0
0
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0
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344
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Job: Senior Postdoc/Bioinformatician Research Fellow @ UEA, Norwich, UK - New deadline
cancer nextgenerationsequencing prostate Job
2.5 years ago • updated 2.1 years ago Daniel Brewer ▴ 90
4
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10
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1.0k
views
how to analyze WGCNA results?
cancer probe deseq2 annotation normalization
updated 2.2 years ago by 3.6k • written 2.2 years ago by ▴ 10
1
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2
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1.0k
views
Partial NA coefficients for 10 probe(s) Limma
limma microarray cancer
updated 2.3 years ago by 3.6k • written 2.4 years ago by • 0
0
votes
3
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459
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Topgo, Deseq and KEGG pathway
annotation cancer
updated 2.3 years ago by 3.2k • written 2.3 years ago by • 0
0
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1
reply
339
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WGCNA analysis on RNAseq and proteoimcs data
cancer
updated 2.4 years ago by ★ 2.7k • written 2.4 years ago by • 0
0
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0
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460
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Job: Computational Biology & Bioinformatics Postdoctoral Research Associate / Research Assistant (Fixed Term) in (Epi)Genomic Regulation of Cancer @ Unive…
cancer computational biology bioinformatics epigenetics Job
2.5 years ago Shamith.Samarajiwa ▴ 180
0
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0
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360
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Job: Data Sciences Statistician - Dana-Farber Cancer Institute
job data science biostatistics bioinformatics cancer Job
2.5 years ago Patrick Kimes ▴ 10
0
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0
replies
459
views
Job: postdoc position in computational cancer biology in Milan, Italy
cancer networks genomics epigenomics Job
2.7 years ago • updated 2.6 years ago marschaefer • 0
0
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0
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293
views
Methylmix results are a bit different from beta values results
cancer methylmix methylation betavalues DMvalues
2.6 years ago luciomora8 • 0
0
votes
0
replies
390
views
Job: Part-time postdoc in Bioinformatics (0.5 FTE) @ UEA, Norwich, UK
cancer biomarkers bioinformatician Job
2.7 years ago Daniel Brewer ▴ 90
2
votes
2
replies
390
views
DESeq2: DE Analysis with very imbalanced samples per condition
deseq2 cancer
updated 2.7 years ago by 37k • written 2.7 years ago by • 0
0
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0
replies
229
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miRNA and drugs
cancer
2.8 years ago maria.k.pagoni • 0
1
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0
replies
453
views
Job: PhD Studentship in Computational Biology and Machine Learning @ University of Cambridge (application deadline November 15th 2019)
cancer genomics deep learning computational biology Job
2.9 years ago • updated 2.8 years ago Shamith.Samarajiwa ▴ 180
1
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0
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518
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Job: Research Assistant/Research Associate in Machine Learning and Computational Biology (fixed-term - closing date is Sunday 20th October 2019) @ Univers…
deep-learning cancer immunotherapy computational biology Job
2.9 years ago • updated 2.8 years ago Shamith.Samarajiwa ▴ 180
0
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0
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490
views
Job: Bolzano, Italy: Post Doc Researcher in bioinformatics of cancer epigenomics
cancer Job
2.8 years ago Johannes Rainer ★ 2.0k
1
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4
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563
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Identify recurrent isoform switches using IsoformSwitchAnalyzeR in multiple rectal tumor samples
cancer Isoform limma IsoformSwitchAnalyzeR
updated 2.8 years ago by ▴ 100 • written 2.8 years ago by • 0
2
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1
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1.3k
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How to perform a differential expression analysis from TCGA file EBPlusPlusAdjustPANCAN_IlluminaHiSeq_RNASeqV2.geneExp.tsv
cancer limma deseq2
updated 2.9 years ago by ▴ 800 • written 2.9 years ago by ▴ 10
0
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0
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371
views
Job: Bioinformatician @ University of Cambridge
cancer bioinformatics R Job
2.9 years ago Shamith.Samarajiwa ▴ 180
0
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0
replies
444
views
Output GenVisR mutation frequency data by gene name instead of by sample name
GenVisR mutation frequency R cancer bioconductor
2.9 years ago sheneicechang • 0
0
votes
0
replies
311
views
News: Bay area Biotech-Pharma Statistics Workshop, with free R user meetup (Nov 6-8)
cancer meetup News
2.9 years ago Ning Leng • 0
0
votes
5
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927
views
RNA-seq time course analysis with only one experimental condition
deseq2 cancer rna-seq time-series
3.1 years ago mah19 • 0
0
votes
0
replies
314
views
MatchGenes in Bumphunter - result list with multiple genes
cancer
3.1 years ago hanna_engqvist • 0
1
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0
replies
986
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Job: Research Assistant position (Fixed Term -12 months initially - application deadline 9th June) in Machine Learning & Computational Cancer Genomics @ …
cancer deep learning genomics Job
3.3 years ago • updated 3.2 years ago Shamith.Samarajiwa ▴ 180
0
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0
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389
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Job: Post-doctoral Fellow - Aparicio Lab @ BC Cancer Research Center, Vancouver BC Canada
single cell genome cancer Job
3.2 years ago jmaanaki • 0
0
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2
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379
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Chromosomal location mapping for miRNAs
cancer
updated 3.2 years ago by 60k • written 3.2 years ago by ▴ 10
0
votes
3
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485
views
Is Background Correction necessary before DESeq analysis
deseq2 cancer
updated 3.2 years ago by 37k • written 3.2 years ago by • 0
1
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4
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480
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DESeq2:Why is there an oblique line in my MA picture, which happened before, what caused this?
deseq2 cancer
updated 3.2 years ago by 37k • written 3.2 years ago by • 0
4
votes
1
reply
4.7k
views
WGCNA-unable to install GO.db package
go cancer
updated 3.3 years ago by 25k • written 3.3 years ago by ▴ 20
0
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1
reply
359
views
Help installing netReg
netReg cancer
3.3 years ago sbrackett007 • 0
2
votes
4
replies
658
views
SCAN.UPC : lost too many samples from GSE (BrainArray + ConvThreshold)
SCAN.UPC probe normalization GEOdata cancer
3.4 years ago • updated 3.3 years ago s.goncalvesclaro ▴ 10
0
votes
0
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455
views
Job: Summer Studentships in Data Science & Computational Biology (2019) at the University of Cambridge
R Python Computational-Biology Cancer Job
3.4 years ago Shamith.Samarajiwa ▴ 180
0
votes
0
replies
617
views
Job: Research Fellow, Computational Multi-Omics of Cancer (University College London)
cancer multi-omics genomic instability machine learning data integration Job
3.4 years ago msecrier ▴ 20
6
votes
7
replies
642
views
Appropriate experimental design for differential expresion
edgeR normalization cancer
updated 3.4 years ago by ★ 1.1k • written 3.4 years ago by ▴ 30
0
votes
1
reply
364
views
Getting a signature specific to each patient
DESeq2 r cancer
updated 3.4 years ago by 60k • written 3.4 years ago by ▴ 30
50 results • Page 1 of 1
Recent ...
Replies
Comment: IsoformSwitchAnalyzeR package on mouse data by bpshtiwan ▴ 10
Hello Ryan, Also, I am not able to find esemble file that has haplotype info in it. Kindly, have you solved the problem? Best
Comment: Design and contrast matrices for analyzing the effect of two factors of interest by Gordon Smyth 46k
I understand that your mock dataset has expression data for just one protein instead of 8000, but is the phenoData complete? Does your real…
Comment: error running UniProt.ws by James W. MacDonald 60k
Or maybe it is a quick fix! Nicely done Marcel!
Answer: Error with TCGA package - TCGAbiolinks by Tiago C. Silva ▴ 220
It is working with the github version. Could you update please? BiocManager::install("BioinformaticsFMRP/TCGAbiolinksGUI.data") …
Comment: Error with TCGA package - TCGAbiolinks by Marcel Ramos 570
You can try the Genomic Data Commons Data Portal at [https://portal.gdc.cancer.gov/][1] or the `GenomicDataCommons` R/Bioconductor packag…
Votes
A: Importance of Order in Design Formula
remove microarray batch effects using Limma
On empirical Bayes of edgeR
Answer: CQN to DESeq2
Comment: package 'BiocInstaller' is not available (for R version 3.4.4)
Awards • All
Centurion to Marcel Ramos 570
Scholar to Gordon Smyth 46k
Popular Question to sunnykevin97 • 0
Popular Question to Alejandro Reyes ★ 1.8k
Popular Question to Leonardo Collado Torres ▴ 1000
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