Showing : cancer • reset
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Job: Cancer Bioinformatician @ University of East Anglia - Norwich Medical School, UK
cancer postdoc biomarkers Biobase
21 days ago Daniel Brewer ▴ 90
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0
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91
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Job: Senior Research Associate in Bioinformatics @ University of East Anglia - Norwich Medical School, UK
Biobase bioinformatics biomarkers cancer
3 months ago Daniel Brewer ▴ 90
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0
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102
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Job: Postdoctoral Data Scientist @ Oxford University, UK
Cancer CancerSubtypes postdoc
5 months ago Daniel Brewer ▴ 90
2
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13
replies
176
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Sample size imbalance in a multi-regional experiment
deseq2 cancer
updated 6 months ago by 32k • written 6 months ago by • 0
4
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7
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186
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Limma sample groups
microarray limma affy cancer
updated 6 months ago by 42k • written 6 months ago by • 0
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5
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140
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TCGA: to extract clinical data from barcode
cancer TCGAbiolinks
updated 7 months ago by 2.7k • written 7 months ago by ▴ 10
1
vote
5
replies
163
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TCGA: clinical data and expression data
microarray annotation cancer
updated 7 months ago by 2.7k • written 7 months ago by • 0
0
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5
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169
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Differential expression analysis of multiple RNA-seq datasets using DESeq2
deseq2 cancer
updated 7 months ago by 32k • written 7 months ago by • 0
0
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0
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130
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Job: Senior Postdoc/Bioinformatician Research Fellow @ UEA, Norwich, UK - New deadline
cancer nextgenerationsequencing prostate Job
14 months ago • updated 9 months ago Daniel Brewer ▴ 90
4
votes
10
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187
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how to analyze WGCNA results?
cancer probe deseq2 annotation normalization
updated 11 months ago by 2.7k • written 11 months ago by ▴ 10
1
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2
replies
72
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Partial NA coefficients for 10 probe(s) Limma
limma microarray cancer
updated 11 months ago by 2.7k • written 12 months ago by • 0
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3
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119
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Topgo, Deseq and KEGG pathway
annotation cancer
updated 12 months ago by 2.6k • written 12 months ago by • 0
0
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1
reply
86
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WGCNA analysis on RNAseq and proteoimcs data
cancer
updated 12 months ago by ★ 2.6k • written 12 months ago by • 0
0
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0
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199
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Job: Computational Biology & Bioinformatics Postdoctoral Research Associate / Research Assistant (Fixed Term) in (Epi)Genomic Regulation of Cancer @ Unive…
cancer computational biology bioinformatics epigenetics Job
13 months ago Shamith.Samarajiwa ▴ 180
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113
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Job: Data Sciences Statistician - Dana-Farber Cancer Institute
job data science biostatistics bioinformatics cancer Job
13 months ago Patrick Kimes ▴ 10
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222
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Job: postdoc position in computational cancer biology in Milan, Italy
cancer networks genomics epigenomics Job
17 months ago • updated 15 months ago marschaefer • 0
0
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0
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100
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Methylmix results are a bit different from beta values results
cancer methylmix methylation betavalues DMvalues
15 months ago luciomora8 • 0
0
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0
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152
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Job: Part-time postdoc in Bioinformatics (0.5 FTE) @ UEA, Norwich, UK
cancer biomarkers bioinformatician Job
16 months ago Daniel Brewer ▴ 90
2
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2
replies
134
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DESeq2: DE Analysis with very imbalanced samples per condition
deseq2 cancer
updated 17 months ago by 32k • written 17 months ago by • 0
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0
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93
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miRNA and drugs
cancer
17 months ago maria.k.pagoni • 0
1
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0
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220
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Job: PhD Studentship in Computational Biology and Machine Learning @ University of Cambridge (application deadline November 15th 2019)
cancer genomics deep learning computational biology Job
18 months ago Shamith.Samarajiwa ▴ 180
1
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0
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287
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Job: Research Assistant/Research Associate in Machine Learning and Computational Biology (fixed-term - closing date is Sunday 20th October 2019) @ Univers…
deep-learning cancer immunotherapy computational biology Job
19 months ago • updated 18 months ago Shamith.Samarajiwa ▴ 180
0
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0
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274
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Job: Bolzano, Italy: Post Doc Researcher in bioinformatics of cancer epigenomics
cancer Job
18 months ago Johannes Rainer ★ 1.9k
1
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4
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208
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Identify recurrent isoform switches using IsoformSwitchAnalyzeR in multiple rectal tumor samples
cancer Isoform limma IsoformSwitchAnalyzeR
updated 18 months ago by ▴ 100 • written 18 months ago by • 0
2
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1
reply
422
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How to perform a differential expression analysis from TCGA file EBPlusPlusAdjustPANCAN_IlluminaHiSeq_RNASeqV2.geneExp.tsv
cancer limma deseq2
updated 18 months ago by ▴ 780 • written 18 months ago by ▴ 10
0
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0
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163
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Job: Bioinformatician @ University of Cambridge
cancer bioinformatics R Job
18 months ago Shamith.Samarajiwa ▴ 180
0
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0
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185
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Output GenVisR mutation frequency data by gene name instead of by sample name
GenVisR mutation frequency R cancer bioconductor
19 months ago • updated 18 months ago sheneicechang • 0
0
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0
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141
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News: Bay area Biotech-Pharma Statistics Workshop, with free R user meetup (Nov 6-8)
cancer meetup News
19 months ago Ning Leng • 0
0
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5
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464
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RNA-seq time course analysis with only one experimental condition
deseq2 cancer rna-seq time-series
21 months ago mah19 • 0
0
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0
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131
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MatchGenes in Bumphunter - result list with multiple genes
cancer
21 months ago hanna_engqvist • 0
1
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730
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Job: Research Assistant position (Fixed Term -12 months initially - application deadline 9th June) in Machine Learning & Computational Cancer Genomics @ …
cancer deep learning genomics Job
24 months ago • updated 22 months ago Shamith.Samarajiwa ▴ 180
0
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192
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Job: Post-doctoral Fellow - Aparicio Lab @ BC Cancer Research Center, Vancouver BC Canada
single cell genome cancer Job
22 months ago jmaanaki • 0
0
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2
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169
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Chromosomal location mapping for miRNAs
cancer
updated 22 months ago by 56k • written 22 months ago by ▴ 10
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3
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215
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Is Background Correction necessary before DESeq analysis
deseq2 cancer
updated 23 months ago by 32k • written 23 months ago by • 0
1
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4
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246
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DESeq2:Why is there an oblique line in my MA picture, which happened before, what caused this?
deseq2 cancer
updated 23 months ago by 32k • written 23 months ago by • 0
3
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1
reply
2.6k
views
WGCNA-unable to install GO.db package
go cancer
updated 23 months ago by 25k • written 23 months ago by ▴ 20
0
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1
reply
180
views
Help installing netReg
netReg cancer
2.0 years ago sbrackett007 • 0
2
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4
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303
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SCAN.UPC : lost too many samples from GSE (BrainArray + ConvThreshold)
SCAN.UPC probe normalization GEOdata cancer
2.0 years ago s.goncalvesclaro ▴ 10
0
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0
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259
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Job: Summer Studentships in Data Science & Computational Biology (2019) at the University of Cambridge
R Python Computational-Biology Cancer Job
2.0 years ago Shamith.Samarajiwa ▴ 180
0
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0
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375
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Job: Research Fellow, Computational Multi-Omics of Cancer (University College London)
cancer multi-omics genomic instability machine learning data integration Job
2.0 years ago msecrier ▴ 20
6
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7
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339
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Appropriate experimental design for differential expresion
edgeR normalization cancer
updated 2.1 years ago by ▴ 680 • written 2.1 years ago by ▴ 20
0
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1
reply
209
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Getting a signature specific to each patient
DESeq2 r cancer
updated 2.1 years ago by 56k • written 2.1 years ago by ▴ 20
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0
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234
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Job: Postdoctoral Research Fellowship: Computational Biology & Cancer Immunotherapy
cancer Job
2.1 years ago luznile • 0
0
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2
replies
689
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Web Scraping From Pubmd (I want to extract gene articles form pubmed abstract and pubmed id i want to extract for number of genes)
cancer gene
updated 2.1 years ago by 25k • written 2.1 years ago by • 0
2
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0
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350
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Job: Research Fellow, Computational Cancer Genomics (University College London)
cancer genomics machine learning data integration multi-omics Job
2.2 years ago msecrier ▴ 20
2
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5
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492
views
edgeR or wilcoxon rank test? Which is right?
edgeR r wilcox RNA-seq cancer
2.2 years ago Fereshteh ▴ 20
2
votes
3
replies
303
views
Batch correction for a sets of genes
cancer deseq2 r rnaseq
updated 2.2 years ago by 32k • written 2.2 years ago by ▴ 20
0
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1
reply
435
views
Meta_analysis of different platforms of microarray data
microarray meta analysis cancer Software R
updated 2.3 years ago by 56k • written 2.3 years ago by • 0
0
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2
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844
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Solexa fastq files and BLAT
Cancer Biostrings ShortRead Cancer Biostrings ShortRead
updated 2.3 years ago by 0 • written 12.3 years ago by ★ 1.9k
3
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0
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453
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Job: Postdoctoral Scientist position at intersection of Single-Cell Cancer Genomics, Data Science and Bioconductor Software Development
job single-cell data science cancer genomics Job
2.3 years ago Stephanie Hicks ▴ 80
1,545 results • Page 1 of 31
Recent ...
Replies
Answer: DepMap copy number by Laurent Gatto 1.5k
Hi Danny - sorry for the delay in answering, I hadn't set `depmap` as a tag yet. Yes, that bug has been fixed in the devel version.
Answer: High fold change reported for comparison of samples with zero values in all samp by James W. MacDonald 56k
The universal recommendation is to remove all genes with consistently low (or all zero) expression values prior to doing any modeling. It i…
Comment: Sample quality weights for RNA-seq by Naomi Altman ★ 6.0k
Thanks Michael. I'll try that. (Limma folks, I'd still love to hear from you.)
Answer: Installation error if message implemented in .Rprofile by Mike Smith ★ 4.9k
A similar issue has been reported recently for rhdf5filters (https://github.com/grimbough/rhdf5filters/issues/11) and rhdf5 (https://github…
Comment: Couldn't load org.Hs.eg.db by Xulei Huo • 0
That does not work, i have tried it.
Votes
Answer: TargetsFile. Where it is?
Answer: TargetsFile. Where it is?
Comment: TargetsFile. Where it is?
Comment: Using DESeq2 to identify changing transcriptional activity in a metagenome
Answer: .onLoad failed in loadNamespace() for 'org.Hs.eg.db'
Awards • All
Scholar to James W. MacDonald 56k
Popular Question to Assa Yeroslaviz ★ 1.5k
Teacher to Martin Morgan 25k
Scholar to Michael Love 32k
Teacher to Naomi Altman ★ 6.0k
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