Showing : cancer • reset
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Job: PhD Positions in Computational Research, Data Science and Artificial Intelligence at the German Cancer Research Center (DKFZ)
cancer bioinformatics proteomics genomics phd
10 weeks ago DKFZ International PhD Program ▴ 10
1
vote
0
replies
209
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Job: Research Fellow in Prostate Cancer Proteomics (Bioinformatics/Stats/Data Analysis) - University of St Andrews
Multiomics Proteomics Cancer Statistics Bioinformatics
6 months ago Andy Lynch ▴ 120
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0
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191
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Calculating tumour purity having only CNA data
PureCN CNA purity cancer
7 months ago JAcky • 0
0
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0
replies
211
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Job: Postdoc position - Genetic epi/statistical genetics
GWAS cancer biomarkers PRS
7 months ago Sarah • 0
0
votes
1
reply
873
views
An ESR essay about software design, and how it applies to Bioconductor
GUI Cancer GUI Cancer
written 18.9 years ago by ▴ 810
1
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263
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Job: PhD Positions in Computational Research, Data Science and Artificial Intelligence at the German Cancer Research Center (DKFZ)
phd cancer genomics proteomics bioinformatics
9 months ago DKFZ International PhD Program ▴ 10
0
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1
reply
9.5k
views
heatmap.2 - change column & row locations; angle / rotate
Cancer Cancer
updated 10 months ago by • 0 • written 9.2 years ago by ▴ 10
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1
reply
358
views
WGCNA
Cancer
updated 14 months ago by ▴ 540 • written 14 months ago by • 0
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0
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448
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Job: Computational Biology Lab Head, Brain Cancer Centre, Melbourne, Australia
australia cancer wehi
21 months ago • updated 17 months ago Gordon Smyth 47k
0
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418
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Job: Cancer Bioinformatician @ University of East Anglia - Norwich Medical School, UK
cancer postdoc biomarkers Biobase
22 months ago Daniel Brewer ▴ 90
0
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0
replies
499
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Job: Senior Research Associate in Bioinformatics @ University of East Anglia - Norwich Medical School, UK
Biobase bioinformatics biomarkers cancer
2.1 years ago Daniel Brewer ▴ 90
0
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0
replies
567
views
Job: Postdoctoral Data Scientist @ Oxford University, UK
Cancer CancerSubtypes postdoc
2.3 years ago Daniel Brewer ▴ 90
2
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13
replies
656
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Sample size imbalance in a multi-regional experiment
deseq2 cancer
updated 2.3 years ago by 39k • written 2.3 years ago by • 0
4
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7
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854
views
Limma sample groups
microarray limma affy cancer
updated 2.3 years ago by 47k • written 2.3 years ago by • 0
0
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5
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939
views
TCGA: to extract clinical data from barcode
cancer TCGAbiolinks
updated 2.4 years ago by 3.7k • written 2.4 years ago by ▴ 10
1
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5
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1.0k
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TCGA: clinical data and expression data
microarray annotation cancer
updated 2.4 years ago by 3.7k • written 2.4 years ago by • 0
0
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5
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894
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Differential expression analysis of multiple RNA-seq datasets using DESeq2
deseq2 cancer
updated 2.4 years ago by 39k • written 2.4 years ago by • 0
0
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0
replies
413
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Job: Senior Postdoc/Bioinformatician Research Fellow @ UEA, Norwich, UK - New deadline
cancer nextgenerationsequencing prostate Job
3.0 years ago • updated 2.6 years ago Daniel Brewer ▴ 90
4
votes
10
replies
1.3k
views
how to analyze WGCNA results?
cancer probe deseq2 annotation normalization
updated 2.7 years ago by 3.7k • written 2.7 years ago by ▴ 10
1
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2
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1.7k
views
Partial NA coefficients for 10 probe(s) Limma
limma microarray cancer
updated 2.8 years ago by 3.7k • written 2.8 years ago by • 0
0
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3
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651
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Topgo, Deseq and KEGG pathway
annotation cancer
updated 2.8 years ago by 3.4k • written 2.8 years ago by • 0
0
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1
reply
445
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WGCNA analysis on RNAseq and proteoimcs data
cancer
updated 2.9 years ago by ★ 2.7k • written 2.9 years ago by • 0
0
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0
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561
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Job: Computational Biology & Bioinformatics Postdoctoral Research Associate / Research Assistant (Fixed Term) in (Epi)Genomic Regulation of Cancer @ Unive…
cancer computational biology bioinformatics epigenetics Job
2.9 years ago Shamith.Samarajiwa ▴ 180
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0
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453
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Job: Data Sciences Statistician - Dana-Farber Cancer Institute
job data science biostatistics bioinformatics cancer Job
2.9 years ago Patrick Kimes ▴ 10
0
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0
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545
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Job: postdoc position in computational cancer biology in Milan, Italy
cancer networks genomics epigenomics Job
3.2 years ago • updated 3.1 years ago marschaefer • 0
0
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0
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367
views
Methylmix results are a bit different from beta values results
cancer methylmix methylation betavalues DMvalues
3.1 years ago luciomora8 • 0
0
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0
replies
483
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Job: Part-time postdoc in Bioinformatics (0.5 FTE) @ UEA, Norwich, UK
cancer biomarkers bioinformatician Job
3.2 years ago Daniel Brewer ▴ 90
2
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2
replies
534
views
DESeq2: DE Analysis with very imbalanced samples per condition
deseq2 cancer
updated 3.2 years ago by 39k • written 3.2 years ago by • 0
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0
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291
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miRNA and drugs
cancer
3.2 years ago maria.k.pagoni • 0
1
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0
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561
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Job: PhD Studentship in Computational Biology and Machine Learning @ University of Cambridge (application deadline November 15th 2019)
cancer genomics deep learning computational biology Job
3.3 years ago Shamith.Samarajiwa ▴ 180
1
vote
0
replies
603
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Job: Research Assistant/Research Associate in Machine Learning and Computational Biology (fixed-term - closing date is Sunday 20th October 2019) @ Univers…
deep-learning cancer immunotherapy computational biology Job
3.4 years ago • updated 3.3 years ago Shamith.Samarajiwa ▴ 180
0
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0
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556
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Job: Bolzano, Italy: Post Doc Researcher in bioinformatics of cancer epigenomics
cancer Job
3.3 years ago Johannes Rainer ★ 2.0k
1
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4
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686
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Identify recurrent isoform switches using IsoformSwitchAnalyzeR in multiple rectal tumor samples
cancer Isoform limma IsoformSwitchAnalyzeR
updated 3.3 years ago by ▴ 120 • written 3.3 years ago by • 0
2
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1
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1.6k
views
How to perform a differential expression analysis from TCGA file EBPlusPlusAdjustPANCAN_IlluminaHiSeq_RNASeqV2.geneExp.tsv
cancer limma deseq2
updated 3.3 years ago by ▴ 800 • written 3.3 years ago by ▴ 10
0
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0
replies
448
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Job: Bioinformatician @ University of Cambridge
cancer bioinformatics R Job
3.3 years ago Shamith.Samarajiwa ▴ 180
0
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0
replies
546
views
Output GenVisR mutation frequency data by gene name instead of by sample name
GenVisR mutation frequency R cancer bioconductor
3.4 years ago sheneicechang • 0
0
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0
replies
387
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News: Bay area Biotech-Pharma Statistics Workshop, with free R user meetup (Nov 6-8)
cancer meetup News
3.4 years ago Ning Leng • 0
0
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5
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1.1k
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RNA-seq time course analysis with only one experimental condition
deseq2 cancer rna-seq time-series
3.5 years ago mah19 • 0
0
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0
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421
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MatchGenes in Bumphunter - result list with multiple genes
cancer
3.6 years ago hanna_engqvist • 0
1
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0
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1.1k
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Job: Research Assistant position (Fixed Term -12 months initially - application deadline 9th June) in Machine Learning & Computational Cancer Genomics @ …
cancer deep learning genomics Job
3.8 years ago • updated 3.7 years ago Shamith.Samarajiwa ▴ 180
0
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0
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472
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Job: Post-doctoral Fellow - Aparicio Lab @ BC Cancer Research Center, Vancouver BC Canada
single cell genome cancer Job
3.7 years ago jmaanaki • 0
0
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2
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545
views
Chromosomal location mapping for miRNAs
cancer
updated 3.7 years ago by 62k • written 3.7 years ago by ▴ 10
0
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3
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577
views
Is Background Correction necessary before DESeq analysis
deseq2 cancer
updated 3.7 years ago by 39k • written 3.7 years ago by • 0
1
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4
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568
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DESeq2:Why is there an oblique line in my MA picture, which happened before, what caused this?
deseq2 cancer
updated 3.7 years ago by 39k • written 3.7 years ago by • 0
4
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1
reply
5.7k
views
WGCNA-unable to install GO.db package
go cancer
updated 3.8 years ago by 25k • written 3.8 years ago by ▴ 20
0
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1
reply
436
views
Help installing netReg
netReg cancer
3.8 years ago sbrackett007 • 0
2
votes
4
replies
775
views
SCAN.UPC : lost too many samples from GSE (BrainArray + ConvThreshold)
SCAN.UPC probe normalization GEOdata cancer
3.8 years ago s.goncalvesclaro ▴ 10
0
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0
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533
views
Job: Summer Studentships in Data Science & Computational Biology (2019) at the University of Cambridge
R Python Computational-Biology Cancer Job
3.8 years ago Shamith.Samarajiwa ▴ 180
0
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0
replies
706
views
Job: Research Fellow, Computational Multi-Omics of Cancer (University College London)
cancer multi-omics genomic instability machine learning data integration Job
3.8 years ago msecrier ▴ 20
6
votes
7
replies
730
views
Appropriate experimental design for differential expresion
edgeR normalization cancer
updated 3.9 years ago by ★ 1.2k • written 3.9 years ago by ▴ 30
50 results • Page 1 of 1
Recent ...
Replies
Comment: Error in .order_seqlevels(chrom_sizes[, "chrom"]) : !anyNA(m32) is not TRUE by Hervé Pagès 16k
See https://github.com/Bioconductor/GenomeInfoDb/issues/82#issuecomment-1409482932
Comment: Error in .order_seqlevels(chrom_sizes[, "chrom"]) : !anyNA(m32) is not TRUE by Hervé Pagès 16k
See https://github.com/Bioconductor/GenomeInfoDb/issues/82#issuecomment-1409482932
Comment: Sva and batch effect by Gordon Smyth 47k
(+1). I find that ComBat tends to introduce spurious differential expression so, you think there's a batch effect affecting the variances a…
Comment: Advice for the analysis of microarray data with limma by Gordon Smyth 47k
You mean references on orthogonal polynomials? Polynomial approximation is a classic topic in mathematics and statistics and there are many…
Comment: Limma-voom with inverse probability weights (similar to sample weights) by Gordon Smyth 47k
The potential problem isn't with empirical Bayes with the fact that the variance estimate from your method A linear model might not be mean…
Votes
Answer: Sva and batch effect
Answer: AnnotationForge::makeOrgPackage "argument is missing, with no default" Errors
Comment: Error in .order_seqlevels(chrom_sizes[, "chrom"]) : !anyNA(m32) is not TRUE
Comment: Error in .order_seqlevels(chrom_sizes[, "chrom"]) : !anyNA(m32) is not TRUE
Answer: Limma-voom with inverse probability weights
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