built vignette using knitr
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Entering edit mode
kmezhoud ▴ 10
@kmezhoud-6841
Last seen 2.3 years ago
Tunisia

Dear All,

I am setting vignette using knitr package.

In DESCRIPTION file I added:

Suggests:
    BiocStyle,
    rmarkdown (>= 0.4.2),
    testthat (>= 0.10.0),
    rappdirs
VignetteBuilder: knitr

In Rmd file, I started by:

---
title: "bioCancer: Interactive Multi-OMICS Cancers Data Visualization and Analysis"
author: "\\
    Karim Mezhoud (<kmezhoud@gmail.com>)\\
        Nuclear Science Center of Tunisia, Nuclear Safety & Security Department"
date: "`r Sys.Date()`"
output:
  BiocStyle::html_document:
    toc: true
  BiocStyle::pdf_document:
    toc: true
vignette: >
  %\VignetteIndexEntry{bioCancer: Interactive Multi-OMICS Cancers Data Visualization and Analysis}
  %\VignetteEngine{knitr::rmarkdown}
  %\VignetteDepends{AnnotationHub}
  %\usepackage[utf8]{inputenc}
---

I am having this error:

* creating vignettes ... ERROR
Error: Vignette 'bioCancer.Rmd' is non-ASCII but has no declared encoding
Execution halted
Error: Command failed (1)
Execution halted

Exited with status 1.

 

Thanks

Karim

knitr vignettes built bioccheck no-ASCII • 771 views
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Entering edit mode

For the record, looks like this was asked (and answered?) on bioc-devel (which is, IMO, a more appropriate place for it).

https://stat.ethz.ch/pipermail/bioc-devel/2016-April/009080.html

 

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