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bioccheck
•
reset
7
votes
2
replies
1.6k
views
Format roxgen comment (alternative to formatR)
BiocCheck
written 3.4 years ago by
ZheFrench
▴ 60
5
votes
2
replies
1.2k
views
Coding Style for BioC Package submissions: camelCaps or snake_case?
BiocCheck
style
updated 3.2 years ago by
Steve Lianoglou
★ 13k • written 3.2 years ago by
pouryany
• 0
0
votes
2
replies
1.1k
views
BiocCheck object initialization - NOTE
BiocC
BiocCheck
3.8 years ago • updated 3.7 years ago
ullrich
▴ 20
0
votes
2
replies
894
views
Error running ExperimentHubData::makeExperimentHubMetadata on Windows 10
BiocCheck
updated 3.8 years ago by
shepherl
4.1k • written 3.8 years ago by
wewolski
▴ 10
0
votes
2
replies
1.7k
views
Installation fails only in Linux... How to debug "ERROR: lazy loading failed for package XXX"?
BiocCheck
Install
martini
4.2 years ago
Hector
• 0
0
votes
1
reply
1.1k
views
BiocCheck gives 'Error in readLines(file, skipNul = TRUE) : cannot open the connection'
BiocCheck
updated 5.5 years ago by
James W. MacDonald
68k • written 5.5 years ago by
zhezhenwang
• 0
1
vote
2
replies
2.3k
views
Dealing With Package Sizes Greater than 5 MB
data
package submission
BiocCheck
5.6 years ago • updated 5.5 years ago
j.flesch
▴ 10
0
votes
12
replies
1.4k
views
no vignettes directory error during BiocCheck checking [SOLVED]
BiocCheck
5.7 years ago
waterincan
• 0
0
votes
2
replies
1.1k
views
BiocCheck package size
BiocCheck
updated 5.8 years ago by
Hervé Pagès
16k • written 5.8 years ago by
zhang.jianhai
▴ 10
4
votes
6
replies
5.1k
views
WARNING: remove set.seed usage in R code
R
bioccheck
updated 6.6 years ago by
shepherl
4.1k • written 6.6 years ago by
xyluo1991
• 0
2
votes
5
replies
2.2k
views
How do you run BiocCheck from a continuous integration service?
continuous-integration
testing
bioccheck
updated 6.6 years ago by
Marcel Ramos
700 • written 8.8 years ago by
richierocks
▴ 40
0
votes
1
reply
1.6k
views
Advice on finding: "1 lines (0%) are > 80 characters long" - my last BiocCheck NOTE
bioccheck
package development
7.3 years ago
Paul Brennan
▴ 10
6
votes
3
replies
3.1k
views
How to solve "WARNING: Add non-empty \value" with roxygen tags
bioccheck
roxygen2
warning
bioc-devel
package development
updated 7.3 years ago by
Lluís Revilla Sancho
▴ 760 • written 7.3 years ago by
Paul Brennan
▴ 10
1
vote
2
replies
1.5k
views
BiocCheck path escape issue
bioccheck
bug
7.8 years ago
Michael Steinbaugh
▴ 90
0
votes
2
replies
1.0k
views
NOT SUPPORTED... in BioC check report
bioccheck
build/check error
updated 7.8 years ago by
Martin Morgan
25k • written 7.8 years ago by
ihnatova
• 0
3
votes
10
replies
3.0k
views
BiocCheck incorrectly reports I'm not registered on this site
bioccheck
updated 2.4 years ago by
Marek Gierlinski
▴ 30 • written 8.3 years ago by
david.a.quigley
▴ 10
0
votes
1
reply
1.5k
views
built vignette using knitr
knitr
vignettes
built
bioccheck
no-ASCII
8.9 years ago
kmezhoud
▴ 10
1
vote
3
replies
2.1k
views
Man pages with runnable examples calculation
BiocCheck
updated 9.0 years ago by
Dan Tenenbaum
★ 8.2k • written 9.0 years ago by
liz.ingsimmons
▴ 140
18 results • Page
1 of 1
Recent ...
Replies
Comment: Weird p-values using DESeq2?
by
ATpoint
★ 4.7k
This does not look like normalized counts but raw counts. Consider using `counts(dds, normalized = TRUE)` or the output of `normTransform()…
Answer: Weird p-values using DESeq2?
by
Wolfgang Huber
★ 13k
Dear Ingrid, thank you for asking. Can you provide the input count matrix (you can "pseudonymize" the biological conditions and the gene n…
Comment: How to visualize these pathways using pathview
by
ingrid.h
• 0
Yes I have seen it, thanks.
Comment: Store Matrix in DataFrame Cell
by
Dario Strbenac
★ 1.6k
It does not appear to work. > DataFrame(name = "test", value = list(matrix(1:4, ncol = 2))) DataFrame with 2 rows and 3 columns …
Comment: Overcoming confounding in batch effect correction
by
Dario Strbenac
★ 1.6k
Actually, it is directly related. ComBat-seq is a part of [sva][1] package. It should use sva tag. [1]: https://bioconductor.org/package…
Votes
A: Fraction count for multi mapping reads; how to generate input file for Deseq2 fo
Comment: Weird p-values using DESeq2?
Comment: Overcoming confounding in batch effect correction
Answer: Store Matrix in DataFrame Cell
Answer: enrichGOgradient color change
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Jim Nemesh
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Wolfgang Huber
★ 13k
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James W. MacDonald
68k
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Hervé Pagès
16k
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shepherl
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