minfi starting from beta values
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Asma rabe ▴ 290
@asma-rabe-4697
Last seen 6.9 years ago
Japan

Hi,

I have methylation table for beta values of many sample. I would like to use minfi to find Hypo and hyper methylated genes. I read minfi documentation. They provide explanation starting from raw data.

 

How can i start analysis from table with beta values like this:

                Sample1   Sample2 Sample3  control1  control2 control3

probe1

probe2

probe3

Thank you in advance.

 

 

 

minfi • 1.4k views
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1
Entering edit mode
Asma rabe ▴ 290
@asma-rabe-4697
Last seen 6.9 years ago
Japan

 

I found this thread helpful

 

https://support.bioconductor.org/p/73941/#74083​

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