Hi,

I have methylation table for beta values of many sample. I would like to use minfi to find Hypo and hyper methylated genes. I read minfi documentation. They provide explanation starting from raw data.

How can i start analysis from table with beta values like this:

                Sample1   Sample2 Sample3  control1  control2 control3

probe1

probe2

probe3

Thank you in advance.

I found this thread helpful

https://support.bioconductor.org/p/73941/#74083​