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kkp7700
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0
@kkp7700-10753
Last seen 8.5 years ago
I compiled my package with "source","binary" in rstudio.
I'm trying to install my package in linux, but I have an error like this.
In windows, installing is good.
> install.packages("/home/kkp/rvsel_0.1.tar.gz",type="source",dependencies=TRUE)
Installing package into ‘/home/kkp/R/x86_64-redhat-linux-gnu-library/3.2’
(as ‘lib’ is unspecified)
inferring 'repos = NULL' from 'pkgs'
* installing *source* package ‘rvsel’ ...
** libs
gfortran -m64 -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -I/usr/lib64/gfortran/modules -c maxcorr.f90 -o maxcorr.o
f951: Warning: Nonexistent include directory ‘/usr/lib64/gfortran/modules’ [-Wmissing-include-dirs]
maxcorr.f90:9:12:
ncard=ncard+2*in(j)-1
1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
maxcorr.f90:39:26:
real sx(no),y(no),zs
1
Warning: Unused variable ‘zs’ declared at (1) [-Wunused-variable]
gfortran -m64 -shared -L/usr/lib64/R/lib -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o rvsel.so maxcorr.o -L/usr/lib64/R/lib -lR
installing to /home/kkp/R/x86_64-redhat-linux-gnu-library/3.2/rvsel/libs
** R
** preparing package for lazy loading
** help
*** installing help indices
converting help for package ‘rvsel’
finding HTML links ... done
rvsel html
** building package indices
** testing if installed package can be loaded
* DONE (rvsel)
> library(rvsel)
Loading required package: Matrix
Does it work to do this?
sudo apt-get install gfortranThank you.
Although I have a gcc in /usr/lib, I should install gfortran in lib64?
And I have a question. If users don't have gfortran, they can't install my package?
I want to submit my package to R-CRAN. What should I do?
It seems like your package has fortran code in it, correct (there are .f90 files in src)? Therefore users who build the package from source will need gfortran. On Mac and Windows they can install the CRAN pre-built binaries.
Probably you should put
SystemRequirements: gfortranin your DESCRIPTION file, maybe even mentioning the packages that will fulfill this for popular Linux distributions.
Ask CRAN about CRAN package policies using the R-package-devel mailing list for questions. Use the bioc-devel mailing list for questions about submission to Bioconductor.