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r package problem
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2
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1.5k
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Rgraphviz installation from source on Linux (Fedora 28) w BioC 3.8 -- failure
package installation
compilation error
r package problem
shared libraries
loading error
5.3 years ago
Martin Maechler
▴ 330
2
votes
4
replies
1.8k
views
Problems installing RBGL in R
rbgl
r package problem
updated 5.3 years ago by
Martin Morgan
25k • written 5.3 years ago by
ngs06
▴ 20
1
vote
1
reply
950
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Strange problem in example check of package
package development
r package problem
build/check error
mmappr2
5.5 years ago
Kyle Johnsen
▴ 20
0
votes
2
replies
637
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Fixing the R package error
r package problem
updated 5.6 years ago by
Mike Smith
★ 6.4k • written 5.6 years ago by
hamedhm
• 0
2
votes
2
replies
2.9k
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bioMaRt error : "BioMart webservice returned an invalid result: biomaRt expected a character string of length 1"
r package problem
5.8 years ago
rdpinho
• 0
0
votes
2
replies
909
views
R package help
r package problem
6.7 years ago
Mohamad S. Hasan
• 0
2
votes
4
replies
1.7k
views
Problem installing Repitools package
package installation
r package problem
updated 7.5 years ago by
Martin Morgan
25k • written 7.5 years ago by
sumudu_rangika
▴ 20
0
votes
6
replies
4.5k
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Nonexistent include directory
software error
r package problem
updated 7.8 years ago by
Martin Morgan
25k • written 7.8 years ago by
kkp7700
• 0
0
votes
0
replies
942
views
problem of GOSemSim R package operation
R package problem
8.4 years ago
zjzace
• 0
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Comment: DEG Filtering
by
Gordon Smyth
50k
RMA normalization is good but batch correction using NOISeq isn't right. Data shouldn't be batch corrected before the limma analysis and NO…
Answer: maftools: Error in validateMaf(maf = maf, isTCGA = isTCGA, rdup = removeDuplicat
by
snijesh
▴ 20
You can try: using `read.delim` or `fread`. ``` my_maf = data.table::fread("path/to/maf/sample.maf") my_maf = read.maf(maf = my_maf) …
Comment: DEG Filtering
by
Amit
• 0
Hi Gordon, Thank you for your response and advice. I want to analyze Dataset GSE18090 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi) whic…
Comment: edgeR, 3 x 2 design with a batch effect and contrasts
by
Gordon Smyth
50k
Yes, that is a quote from [A guide to creating design matrices for gene expression experiments](https://bioconductor.org/packages/release/w…
Comment: edgeR, 3 x 2 design with a batch effect and contrasts
by
JKim
• 0
Thank you. I think I found why the order matters. > Although an intercept-free design matrix has been coded using the 0+ notation, the in…
Votes
Answer: padj-based gradient scale from barplot (clusterProfiler results) does not work p
C: How to check that the reads in two fastq files are in the same order
Answer: edgeR, 3 x 2 design with a batch effect and contrasts
Answer: Need help with creating and plotting temporal clustering analysis of DEGs
Answer: Problem converting msigdb Human symbols to Zebrafish in gmt format
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