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Question: workflow.R in BioC 3.3
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gravatar for yasmin.friedmann
2.1 years ago by
yasmin.friedmann0 wrote:

Hi,

I would like to install the rnaseqgene workflow. But the command 

> source("http://bioconductor.org/workflows.R")

gives me the following error

Bioconductor version 3.3 (BiocInstaller 1.22.2), ?biocLite for help

Error: BiocInstaller:::BIOC_VERSION == "3.2" is not TRUE

which, as I understand from previous questions, is due to the hard coding of the bioc version...is there any way to circumvent this?

Many thanks!

Yasmin

ADD COMMENTlink modified 2.1 years ago by j.baldauf0 • written 2.1 years ago by yasmin.friedmann0

It may be that the workflow machine needs to be updated to R and Bioconductor 3.3. I'll wait for someone from the Bioc core team to weigh in though.

ADD REPLYlink written 2.1 years ago by Michael Love18k

This is correct. This will happen soon. 

ADD REPLYlink written 2.1 years ago by Dan Tenenbaum ♦♦ 8.2k
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gravatar for j.baldauf
2.1 years ago by
j.baldauf0
j.baldauf0 wrote:

I just observed the same error message. Do you already know when this problem will be fixed? 

ADD COMMENTlink written 2.1 years ago by j.baldauf0

The workflow builders have been updated to R-3.3 and Bioconductor-3.3. However some workflows are not building. We're working with the authors to make that happen. Then they will be available without the error message.

ADD REPLYlink written 2.1 years ago by Dan Tenenbaum ♦♦ 8.2k
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