Question: error when running champ.CNA command
0
gravatar for yuping.zhang
3.2 years ago by
yuping.zhang0 wrote:

I want to use my own intensity file as the input of champ.CNA function. But I run into the error:

> cna=champ.CNA(loadFile = T, file = "intensity.txt", pd=targets, filterXY = F)
Run champ.CNA
Error in read.table(file, row.names = T, sep = "\t") :
  invalid 'row.names' specification

 

Clearly "row.names= T" is causing the problem. Could you fix this? Thanks!

champ • 440 views
ADD COMMENTlink modified 3.2 years ago by AST50 • written 3.2 years ago by yuping.zhang0
Answer: error when running champ.CNA command
0
gravatar for AST
3.2 years ago by
AST50
INDIA
AST50 wrote:

I guess, because your file name and row names are same the function is giving the error.

Please try using a different name for your file.

ADD COMMENTlink written 3.2 years ago by AST50
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