I just used the cummeRbund, all steps according to the official manual.
> library(cummeRbund) >cuff<-readCufflinks(gtfFile = "cuffcmp.combined.gtf",genome="hg38") > cuff
But when I run:
always output a wrong:
Scale for 'x' is already present. Adding another scale for 'x', which will replace the existing scale.
I can't find the parameter, where could I set the scale x, maybe someone could tell me.
Any help would be greatly appreciated. Thanks