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Comment: matrix with Salmon gene-level quantifications in DESeq
by
Michael Love
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I feel like this is definitely covered in the vignette. We show importing multiple samples to gene level.
Comment: matrix with Salmon gene-level quantifications in DESeq
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luca.s
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Thanks James for the quick answer,
but does the tximport package work also for importing a single matrix in which are contained all gene qu…
Comment: ORF finding in DECIPHER
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Erik Wright
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Thanks for reporting this issue.
1. Which version of DECIPHER are you using? 2.18 has known bugs but 2.20 should be fine.
2. Are your se…
Comment: DESeq2: Variable Importance
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Michael Love
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What you do with the deviance is up to you, I was just pointing out that it is an outputted quantity.
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by
lolol
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Ah yes, I see the deviance now in mcols. Would I use this to calculate the pseudo R-squared (McFaddens), comparing each model with a single…
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