Hello!

I have just run maSigPro's see.genes() function to obtain the graphical output for clustering. How do I then obtain lists of the genes that contributed to the different clusters?

Thank you!

Figured it out, I was being silly.

In case this helps anyone else: cluster assignments are all in the 'cut' vector.

Hello,

Function see.genes() gives two outputs: graphical and console outputs. Lists of the genes in each group can be obtained with these instructions:
H <- see.genes(...)
names(which(H$cut==1)) # for first cluster.
...