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Question: maSigPro genes from clusters
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gravatar for ls299
20 months ago by
ls2990
ls2990 wrote:

Hello!

I have just run maSigPro's see.genes() function to obtain the graphical output for clustering. How do I then obtain lists of the genes that contributed to the different clusters?

Thank you!

ADD COMMENTlink modified 19 months ago by Mª José Nueda90 • written 20 months ago by ls2990
0
gravatar for ls299
20 months ago by
ls2990
ls2990 wrote:

Figured it out, I was being silly.

In case this helps anyone else: cluster assignments are all in the 'cut' vector.

ADD COMMENTlink written 20 months ago by ls2990
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gravatar for Mª José Nueda
19 months ago by
Spain
Mª José Nueda90 wrote:

Hello,

Function see.genes() gives two outputs: graphical and console outputs. Lists of the genes in each group can be obtained with these instructions:
H <- see.genes(...)
names(which(H$cut==1)) # for first cluster.
...
 

ADD COMMENTlink written 19 months ago by Mª José Nueda90
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