maSigPro genes from clusters
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ls299 • 0
@ls299-10652
Last seen 4.7 years ago

Hello!

I have just run maSigPro's see.genes() function to obtain the graphical output for clustering. How do I then obtain lists of the genes that contributed to the different clusters?

Thank you!

masigpro clustering • 1.3k views
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ls299 • 0
@ls299-10652
Last seen 4.7 years ago

Figured it out, I was being silly.

In case this helps anyone else: cluster assignments are all in the 'cut' vector.

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@ma-jose-nueda-2304
Last seen 17 months ago
Spain

Hello,

Function see.genes() gives two outputs: graphical and console outputs. Lists of the genes in each group can be obtained with these instructions:
H <- see.genes(...)
names(which(H$cut==1)) # for first cluster.
...
 

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