Search
Question: maSigPro genes from clusters
0
gravatar for ls299
17 months ago by
ls2990
ls2990 wrote:

Hello!

I have just run maSigPro's see.genes() function to obtain the graphical output for clustering. How do I then obtain lists of the genes that contributed to the different clusters?

Thank you!

ADD COMMENTlink modified 16 months ago by Mª José Nueda90 • written 17 months ago by ls2990
0
gravatar for ls299
17 months ago by
ls2990
ls2990 wrote:

Figured it out, I was being silly.

In case this helps anyone else: cluster assignments are all in the 'cut' vector.

ADD COMMENTlink written 17 months ago by ls2990
0
gravatar for Mª José Nueda
16 months ago by
Spain
Mª José Nueda90 wrote:

Hello,

Function see.genes() gives two outputs: graphical and console outputs. Lists of the genes in each group can be obtained with these instructions:
H <- see.genes(...)
names(which(H$cut==1)) # for first cluster.
...
 

ADD COMMENTlink written 16 months ago by Mª José Nueda90
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.2.0
Traffic: 120 users visited in the last hour