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masigpro
•
reset
0
votes
0
replies
101
views
maSigPro visualizing individually each plot from each cluster
plot
maSigPro
Clustering
5 months ago
oseias.rf.junior
• 0
0
votes
0
replies
167
views
Normalization RNA-seq data maSigPro
maSigPro
5 months ago
W.a.m.dekker
• 0
0
votes
1
reply
397
views
t.fit stops in masigpro while running RNA seq data
RNASeqData
maSigPro
21 months ago
subashika
• 0
0
votes
1
reply
474
views
maSigPro see.genes expression profile graphs. Change color and label text size
maSigPro
graph
updated 2.2 years ago by
Mª José Nueda
▴ 90 • written 2.2 years ago by
Itzel
• 0
0
votes
2
replies
783
views
maSigPro see.genes function gives "invalid 'times' argument" error for single time course data
masigpro
2.7 years ago • updated 2.1 years ago
daw277
• 0
0
votes
1
reply
431
views
maSigPro: PlotGroups function only plots one out of six time points
maSigPro
PlotGroups
updated 11 months ago by
cgroot
• 0 • written 2.5 years ago by
Olof.rundquist
• 0
0
votes
2
replies
425
views
maSigPro Influential genes, step.methods and gene removal
maSigPro
TimeCourse
updated 2.6 years ago by
Michael Love
39k • written 2.6 years ago by
DcL-A
• 0
0
votes
2
replies
382
views
MaSigPro Single Series Analysis
maSigPro
2.9 years ago
dorothy.mitchell
• 0
0
votes
1
reply
901
views
glm.fit problem with maSigPro
software error
maSigPro
Nueda
RNAseq
updated 4.0 years ago by
James W. MacDonald
62k • written 4.0 years ago by
lalamig
• 0
1
vote
3
replies
667
views
masigpro: could not find function "negative.binomial"
masigpro
4.2 years ago
nicolas.descostes
▴ 20
0
votes
6
replies
1.3k
views
[maSigPro] two color array analysis of time series in different cell lines.???
limma
maSigPro
limma
maSigPro
updated 4.4 years ago by
sbbinfo90
• 0 • written 9.3 years ago by
neeraj rana
▴ 60
0
votes
5
replies
4.7k
views
masigpro Error in terms.formula(formula, data = data) : '.' in formula and no 'data' argument
masigpro
updated 4.9 years ago by
naets_matthias
• 0 • written 7.7 years ago by
john
▴ 120
0
votes
1
reply
1.1k
views
maSigPro: error using see.genes()
masigpro
updated 4.9 years ago by
therealsisterdot
• 0 • written 5.7 years ago by
valentine.murigneux
• 0
3
votes
5
replies
1.3k
views
MasigPro and estimation of theta for negative binomial law
R
masigpro
edgr
rnaseq
negative binomial model
5.0 years ago
nicolas.hipp
▴ 20
3
votes
7
replies
3.9k
views
Limma PlotMDS: what values should be used?
limma
edger
plotmds
tmm
masigpro
5.1 years ago
dacaba.92
▴ 10
0
votes
0
replies
732
views
Understanding NextMaSigPro, regression fit and stepwise regression
timecourse
rnaseq
masigpro
5.2 years ago
jelisaveta.jeki.djordjevic
• 0
0
votes
0
replies
608
views
How to specify covariates in maSigPro analysis (like limma)
masigpro
covariates
limma
differential expression
time-course
5.3 years ago
veersingh.marwah
• 0
0
votes
0
replies
671
views
Iso-maSigPro errors in IsoModel and PodiumChange
masigpro
5.4 years ago
xin.zhou
• 0
0
votes
1
reply
637
views
Are significant genes ordered in maSigPro?
masigpro
rnaseq
updated 5.7 years ago by
James W. MacDonald
62k • written 5.7 years ago by
itspilipineiro
• 0
0
votes
0
replies
5.9k
views
maSigPro error PlotGroups [Error: (list) object cannot be coerced to type 'double']
masigpro
error
PlotGroups
5.7 years ago
nicolas.descostes
▴ 20
0
votes
0
replies
723
views
Block design for maSigPro
masigpro
timecourse
6.5 years ago
sanj
▴ 20
0
votes
2
replies
1.5k
views
maSigPro genes from clusters
masigpro
clustering
updated 6.6 years ago by
Mª José Nueda
▴ 90 • written 6.6 years ago by
ls299
• 0
0
votes
0
replies
614
views
maSigPro groups comparisons
masigpro
6.6 years ago
ls299
• 0
0
votes
1
reply
1.0k
views
maSigPro edesign and error message
masigpro
6.9 years ago
simonjean434
▴ 10
0
votes
0
replies
760
views
MaSigPro - pre-filtering of genes
MaSigPro
6.9 years ago
GFM
▴ 20
0
votes
1
reply
1.3k
views
Microarray time-course clustering, using "hclust" in masigPro
clustering
hclust
maSigPro
updated 7.0 years ago by
efejiroe
• 0 • written 7.5 years ago by
dimitri.leonid.lindenwald
▴ 50
0
votes
1
reply
2.6k
views
maSigPro help- p. vector error
RNASeq
maSigPro
a4
RNASeq
maSigPro
a4
updated 7.3 years ago by
Mª José Nueda
▴ 90 • written 9.0 years ago by
Guest User
★ 12k
0
votes
2
replies
822
views
row with zeros
maSigPro
min.obs
p.vector
updated 7.3 years ago by
Mª José Nueda
▴ 90 • written 7.4 years ago by
gmdc
• 0
0
votes
1
reply
877
views
Paralelization of maSigPro
maSigPro
parallel
7.4 years ago
gmdc
• 0
0
votes
1
reply
1.2k
views
RNASeq time-course analysis with maSigPro: T.fit error when assessing multiple groups
rnaseq
masigpro
timecourse
7.8 years ago
Ryan Goosen
• 0
0
votes
1
reply
694
views
maSigPro dataset information
maSigPro
maSigPro
9.3 years ago
Guest User
★ 12k
0
votes
3
replies
1.1k
views
maSigPro and "vars" argument
maSigPro
maSigPro
updated 11.4 years ago by
Mª José Nueda
▴ 90 • written 11.4 years ago by
Andrea Grilli
▴ 240
0
votes
1
reply
1.4k
views
maSigPro and "subscript out of bounds"
Normalization
Regression
maSigPro
Normalization
Regression
maSigPro
updated 11.7 years ago by
Andrea Grilli
▴ 240 • written 11.7 years ago by
Valerie Obenchain
★ 6.7k
0
votes
0
replies
917
views
maSigPro and "subscript out of bounds"
Normalization
Regression
maSigPro
Normalization
Regression
maSigPro
11.7 years ago
Andrea Grilli
▴ 240
0
votes
0
replies
989
views
[maSigPro] Splitting data - how?
maSigPro
maSigPro
11.8 years ago
Valerie Obenchain
★ 6.7k
0
votes
1
reply
968
views
Paired Data in maSigPro
maSigPro
maSigPro
12.2 years ago • updated 12.1 years ago
Mike Walter
▴ 230
0
votes
3
replies
1.0k
views
[maSigPro] T.fit - Error in rownames(coefficients)
maSigPro
maSigPro
updated 12.2 years ago by
Mª José Nueda
▴ 90 • written 12.2 years ago by
Maciej Jończyk
▴ 720
0
votes
1
reply
909
views
clustering of microarray time-series data
Microarray
Clustering
limma
maSigPro
Microarray
Clustering
limma
maSigPro
updated 12.3 years ago by
avehna
▴ 240 • written 12.3 years ago by
Maciej Jończyk
▴ 720
0
votes
1
reply
1.3k
views
Design matrix for time course analysis with maSigPro
GLAD
maSigPro
GLAD
maSigPro
updated 12.7 years ago by
Wolfgang Huber
13k • written 12.7 years ago by
Matthias Boeck
▴ 10
0
votes
1
reply
1.4k
views
[maSigPro] Error in T.fit - NAs introduced by coercion
maSigPro
maSigPro
updated 12.8 years ago by
Mª José Nueda
▴ 90 • written 12.8 years ago by
Maciej Jończyk
▴ 720
0
votes
3
replies
1.1k
views
[maSigPro] How to analyze 2-colour microarrays?
Normalization
limma
maSigPro
Normalization
limma
maSigPro
updated 12.8 years ago by
Mª José Nueda
▴ 90 • written 12.8 years ago by
Maciej Jończyk
▴ 720
0
votes
1
reply
969
views
Fwd: maSigPro - NA values for coefficient estimates - Is a polynomical fit recommended for my data?
Annotation
limma
maSigPro
a4
Annotation
limma
maSigPro
a4
updated 13.2 years ago by
jeremy wilson
▴ 150 • written 13.2 years ago by
Ana Conesa
▴ 340
0
votes
0
replies
863
views
maSigPro - NA values for coefficient estimates - Is a polynomical fit recommended for my data?
limma
maSigPro
a4
limma
maSigPro
a4
13.3 years ago
jeremy wilson
▴ 150
0
votes
1
reply
970
views
maSigPro error in getting a design matrix
maSigPro
a4
maSigPro
a4
13.3 years ago
lohith madireddy
▴ 40
0
votes
2
replies
962
views
question about p-values in maSigPro
affy
maSigPro
affy
maSigPro
13.6 years ago
Dick Beyer
★ 1.4k
0
votes
3
replies
967
views
maSigPro and EMV no longer available for windows.
maSigPro
maSigPro
updated 13.7 years ago by
Ana Conesa
▴ 340 • written 13.7 years ago by
Giulio Di Giovanni
▴ 540
0
votes
0
replies
1.1k
views
maSigPro time problem (2.trial)
maSigPro
maSigPro
13.7 years ago
Klaus-Peter Pleissner
▴ 70
0
votes
1
reply
915
views
MaSigPro
maSigPro
maSigPro
updated 15.3 years ago by
Mª José Nueda
▴ 90 • written 15.3 years ago by
Narinder Singh Sahni
▴ 50
0
votes
2
replies
809
views
Time course cDNA two color array analysis
TimeCourse
limma
timecourse
maSigPro
TimeCourse
limma
timecourse
maSigPro
16.1 years ago • updated 16.0 years ago
Marcelo Laia
▴ 450
0
votes
0
replies
866
views
microarray analysis of a dose response * strain experiment
Microarray
affy
limma
maSigPro
DOSE
BRAIN
Microarray
affy
limma
maSigPro
DOSE
BRAIN
16.3 years ago
Naomi Altman
★ 6.0k
50 results • Page
1 of 1
Recent ...
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Answer: nullranges
by
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Thanks for posting here. So you want to move the small RNA loci around the genome? Do they tend to cluster? For mouse or human genom…
Answer: Question about GWASTools gdsSubset
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SuperD
• 0
Have to define 'snp,scan' or 'scan,snp' for my case.
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by
Leonardo Collado Torres
★ 1.0k
Please don't reopen that issue thread, as it will ping lots of people. Can you try using the newly documented Amazon AWS mirror? ```R lib…
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• 0
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Answer: struggling to create a heatmap
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★ 2.1k
I am reluctant to read through that wall of code. Here is what would work. Note that prefiltering makes sense before, not after running `DE…
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Significant reporter activity with mpralm function
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Answer: Clarification of what DESeq2::estimateSizeFactors controlGenes does and when it
Clarification of what DESeq2::estimateSizeFactors controlGenes does and when it should *not* be used
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• 0
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62k
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