Question

How to get dispersion values for DESeq2

0

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hiraksarkar.cs ▴ 10

@hiraksarkarcs-9446

Last seen 7.8 years ago

Hi,

I am trying to get direct dispersion estimates from DESeq2. As the results() does not contain the direct estimates, is there an way to get hold of the estimates ? I want plug in these estimates in my model, so dispersion plot won't work.

Thanks

deseq2 dispersion R • 1.6k views

ADD COMMENT • link updated 7.9 years ago by Michael Love 41k • written 7.9 years ago by hiraksarkar.cs ▴ 10

score 3 · Accepted Answer · 2016-06-22

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Michael Love 41k

@mikelove

Last seen 2 minutes ago

United States

Check in the vignette section "Access to all calculated values"

vignette("DESeq2")

ADD COMMENT • link 7.9 years ago Michael Love 41k

1

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Thanks, Just to make sure are you referring to the section "Extracting transformed values" on page 23.

ADD REPLY • link 7.9 years ago hiraksarkar.cs ▴ 10

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No I'm referring to Section 3.10 "Access to all calculated values" that starts on page 34.

ADD REPLY • link 7.9 years ago Michael Love 41k