Question: metagenomeSeq for continuous phenotype
1
gravatar for pjgalli2
2.9 years ago by
pjgalli20
pjgalli20 wrote:

Hello.  I am trying to run the fitFeatureModel function in metagenomeSeq for a continuous phenotype, but I receive this error:

Error in limma::squeezeVar(fit[-exclude, "s2"], fit[-exclude, "df"]) : 
  var is empty

Is there a way to use metagenomeSeq for a continuous phenotype?  Thank you.

ADD COMMENTlink modified 2.9 years ago • written 2.9 years ago by pjgalli20
Answer: metagenomeSeq for continuous phenotype
0
gravatar for Joseph Nathaniel Paulson
2.9 years ago by
United States
Joseph Nathaniel Paulson270 wrote:
Hi, Thanks - I'll write an update to fix this. Can you please post on the github tracker? Thanks! On 2016-07-11 09:34, pjgalli2 [bioc] wrote: > Activity on a post you are following on support.bioconductor.org [1] > > User pjgalli2 [2] wrote Question: metagenomeSeq for continuous phenotype [3]: > > Hello. I am trying to run the fitFeatureModel function in metagenomeSeq for a continuous phenotype, but I receive this error: > > Error in limma::squeezeVar(fit[-exclude, "s2"], fit[-exclude, "df"]) : > var is empty > > Is there a way to use metagenomeSeq for a continuous phenotype? Thank you. > ------------------------- > > Post tags: metagenomeseq, continuous, limma > > You may reply via email or visit metagenomeSeq for continuous phenotype Links: ------ [1] https://support.bioconductor.org [2] pjgalli2 [3] metagenomeSeq for continuous phenotype
ADD COMMENTlink written 2.9 years ago by Joseph Nathaniel Paulson270
Answer: metagenomeSeq for continuous phenotype
0
gravatar for pjgalli2
2.9 years ago by
pjgalli20
pjgalli20 wrote:

Just posted it here:

https://github.com/HCBravoLab/metagenomeSeq/issues/36

ADD COMMENTlink written 2.9 years ago by pjgalli20
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