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Question: Could you give me some suggestions for update Affy .cdf file
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gravatar for cmzuo13
2.2 years ago by
cmzuo130
cmzuo130 wrote:

Hey, I want to use the mapping result that affy probe mapped to genome to update the .cdf file. do you have some suggestions for this work? which package do you want to recommend?  Thanks. 

 

 

 

ADD COMMENTlink modified 2.2 years ago • written 2.2 years ago by cmzuo130
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gravatar for James W. MacDonald
2.2 years ago by
United States
James W. MacDonald47k wrote:

It's not exactly clear what you want, but I assume you are talking about the MBNI re-mapped cdfs? It used to be that you could use biocLite to get them, but I think these days you just have to go get them by hand and install. I assume you want the most current version, but those are questions for Manhong Dai, who is in charge of those things.

ADD COMMENTlink written 2.2 years ago by James W. MacDonald47k
0
gravatar for cmzuo13
2.2 years ago by
cmzuo130
cmzuo130 wrote:

Thanks for your quickly answer. Our program designed a affy probe for switchgrass. but with the advent of new genome of switchgrass. we want to use the newest geneome to re-annotate this probe and respond cdf file.  I have got the mapping result that map probe against genome.  As with this update cdf file, could you give me pipleline I sholuld follow? Thanks

ADD COMMENTlink written 2.2 years ago by cmzuo130

If you have a comment, please click the ADD COMMENT button and type in the box that appears. The box below, (labeled 'Add your answer') is intended for people to use for answering questions.

Answers to your question can be found at MBNI's webpage. They are not a part of Bioconductor, so any questions should be directed to Manhong Dai, rather than being posted here.

ADD REPLYlink written 2.2 years ago by James W. MacDonald47k

Ok, I got. Thanks.  

ADD REPLYlink written 2.2 years ago by cmzuo130
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