parnotes rev. 2 breaks Bioconductor LATEX Style 2.0
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kevin.rue ▴ 300
@kevinrue-6757
Last seen 12 weeks ago
University of Oxford

Dear Maintainer,

In restrospect, I probably should have posted here before opening an issue on GitHub 

I believe a recent release of parnotes (rev. 2, https://www.ctan.org/pkg/parnotes) has broken the Bioconductor LATEX Style 2.0.

While a day ago Travis CI was perfectly happy compiling my package (currently hosted on GitHub), the same Travis configuration now returns the following error:

! Package parnotes Error: Cannot use custom definition of \parnotemarkfmt
(parnotes)                in parnotes rev. 2 or later. Use \theparnotemark
(parnotes)                and \parnotecusmarkfmt instead.

I can see in your own Style 2.0 vignette that parnotes is one of the LaTeX packages that is loaded and used by this style.
I'll appreciate if you could look into the issue, and update your code to match the new parnotes requirements.

Thank you very much for the great work!
Kevin

biocstyle • 745 views
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Andrzej Oleś ▴ 750
@andrzej-oles-5540
Last seen 18 months ago
Heidelberg, Germany

Hi Kevin,

thank you for reporting the issue, I will look into it.

Actually, the preferred place to report such problems is the canonical GitHub repository if a Bioconductor package has one, otherwise use the support forum. Both BiocStyle devel landing page and BiocStyle 2.0 package vignette point to  https://github.com/Bioconductor/BiocStyle/issues for posting bug reports.

Cheers,

Andrzej

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