Fwd: installing Bioconductor in R
1
0
Entering edit mode
@maggie-cheang-188
Last seen 9.6 years ago
Hi, I have installed R and being using R for some cDNA analysis. (Mac OSX) I would like to add the Bioconductor in the R I downloaded the bioconductor package and put the folder in the R folder. however, when i type library(vsn), or library(Biobase) in R session R session said can't find these packages. please kindly advise me how I should do it and I try to use getBioC() script to run in the R session.. and this time they said my R is not configured to run HTTP.. :( so would you mind to advise me how I can solve either of the above or below options? Thank you so much Maggie
• 950 views
ADD COMMENT
0
Entering edit mode
Jeff Gentry ★ 3.9k
@jeff-gentry-12
Last seen 9.6 years ago
> Hi, I have installed R and being using R for some cDNA analysis. (Mac > OSX) I will preface this by saying that I'm not very familiar w/ MacOSX and it's installation procedures. > I would like to add the Bioconductor in the R > I downloaded the bioconductor package and put the folder in the R folder. > however, when i type library(vsn), or library(Biobase) in R session > R session said can't find these packages. > please kindly advise me how I should do it What "bioconductor package" did you download? The MacOSX package bundle? > and I try to use getBioC() script to run in the R session.. and this > time they said my R is not configured to run HTTP.. :( Unless OSX registers as a unix under .Platform$OS, I do not think that OSX will work at all under getBioC(). -Jeff
ADD COMMENT
0
Entering edit mode
The other alternative might be to download Jan de Leeuw's Mac OS X R installation from http://gifi.stat.pub.ucla.edu/pub which contains, among some 200-ish other packages, Bioconductor 1.1 On Wednesday, February 19, 2003, at 04:46 PM, Jeff Gentry wrote: >> Hi, I have installed R and being using R for some cDNA analysis. (Mac >> OSX) > > I will preface this by saying that I'm not very familiar w/ MacOSX and > it's installation procedures. > >> I would like to add the Bioconductor in the R >> I downloaded the bioconductor package and put the folder in the R >> folder. >> however, when i type library(vsn), or library(Biobase) in R session >> R session said can't find these packages. >> please kindly advise me how I should do it > > What "bioconductor package" did you download? The MacOSX package > bundle? > >> and I try to use getBioC() script to run in the R session.. and this >> time they said my R is not configured to run HTTP.. :( > > Unless OSX registers as a unix under .Platform$OS, I do not think that > OSX > will work at all under getBioC(). > > -Jeff > > _______________________________________________ > Bioconductor mailing list > Bioconductor@stat.math.ethz.ch > http://www.stat.math.ethz.ch/mailman/listinfo/bioconductor > Byron Ellis (bellis@hsph.harvard.edu) "Oook" - The Librarian
ADD REPLY

Login before adding your answer.

Traffic: 1009 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6