Hi,

i am very new to NGS analysis, so now i am learning how to use Rsamtools pakcages with "An introduction to Rsamtools" documents.

however, while i was just following the Rsamtools documents, i got an error as below.

if you know how to solve this, would you mind telling me ?

Section : 3.1 Assembling a BamViews instance

library(KEGG.db)
kid <- revmap(KEGGPATHID2NAME)[["Caffeine metabolism"]]
egid <- KEGGPATHID2EXTID[[sprintf("hsa%s", kid)]]

bamRanges <- transcripts(TxDb.Hsapiens.UCSC.hg18.knownGene,filter=list(gene_id=egid))

Error in .local(x, ...) :
  unused argument (filter = list(gene_id = c("10", "1544", "1548", "1549", "1553", "7498", "9")))

Make sure that you are using the current version of R (3.3.1) and Bioconductor (3.3). These are reported when in a new R session you load the package BiocInstaller, as

> library(BiocInstaller)
Bioconductor version 3.3 (BiocInstaller 1.22.3), ?biocLite for help
> R.version.string
[1] "R version 3.3.1 Patched (2016-08-23 r71141)"

And that your packages are up-to-date

> BiocInstaller::biocValid()
[1] TRUE

If problems persist, report (add to the text of your question, above, and post a COMMENT) the output of traceback() (immediately after the error occurs) and sessionInfo()

See these instructions for help with installation