Our Bioconductor package, ggtree, was accepted to be published in Methods in Ecology and Evolution:

G Yu, DK Smith, H Zhu, Y Guan, TTY Lam^*. http://onlinelibrary.wiley.com/doi/10.1111/2041-210X.12628/abstract">ggtree: an R package for visualization and annotation of phylogenetic trees with their covariates and other associated data. Methods in Ecology and Evolution. http://dx.doi.org/10.1111/2041-210X.12628">doi:10.1111/2041-210X.12628.