Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
ggtree
•
reset
0
votes
0
replies
97
views
ggtree tip label position (depth)
ggtree
17 days ago
Roope
• 0
1
vote
4
replies
3.5k
views
ggtree functions suddenly stopped working: "Error in offspring.tbl_tree_item(..."
ggtree
updated 9 months ago by
xushuangbin
• 0 • written 9 months ago by
Hank
• 0
0
votes
3
replies
712
views
Annotated dendogram (tree) from tbl_graph
dendogram
ggtreeExtra
ggtree
annotation
Annotation
13 months ago
christian.dina
• 0
0
votes
0
replies
423
views
Using a clustree object to draw a "classical" dendogram
ggplot
dendogram
ggtreeExtra
clustree
ggtree
13 months ago
christian.dina
• 0
2
votes
1
reply
575
views
Latest version of ggtree (3.6.2) unavailable on Anaconda. Only 3.6.0 exists.
ggtree
updated 13 months ago by
shepherl
3.8k • written 13 months ago by
John
▴ 10
0
votes
1
reply
1.3k
views
[ NEED HELP >:( ] ggtree Installation Error
ggtree
updated 19 months ago by
shepherl
3.8k • written 19 months ago by
Muhammad Isa
• 0
2
votes
3
replies
8.6k
views
ggtree install
ggtree
rvcheck
updated 2.5 years ago by
Brock
• 0 • written 2.6 years ago by
bjarke
▴ 10
0
votes
0
replies
1.0k
views
ggtree, ggimage : issue with radial rotation of external image files around circular phylogeny
ggimage
ggtree
2.9 years ago
moria.robinson
• 0
0
votes
0
replies
737
views
How to place jplace Querries from EPA RAxML on the tree as branches in Teeio/ggtree?
treeio
EPA
jplace
RAxML
ggtree
3.1 years ago
Vincent
• 0
3
votes
3
replies
1.1k
views
How can I use 'geom_taxalink()' with the circular layout in the 'ggtree' package in R?
r
ggtree
phylogeny
updated 3.8 years ago by
Guangchuang Yu
★ 1.2k • written 3.8 years ago by
sd.gamboa.t
▴ 10
6
votes
2
replies
4.2k
views
making tree from NCBI taxonomy data for ggtree
ggtree
updated 4.3 years ago by
saladi
• 0 • written 8.0 years ago by
map2085
▴ 40
0
votes
1
reply
1.4k
views
Highligting specific tips/taxa with asterisk using ggtree
ggtree
updated 5.0 years ago by
Guangchuang Yu
★ 1.2k • written 5.2 years ago by
alisa.postma
• 0
0
votes
1
reply
1.7k
views
How to save changes on a phylogeneitc tree using ggtree and treeio?
ggtree
treeio
5.8 years ago
jdimopoulos21
• 0
2
votes
2
replies
1.5k
views
Something wrong with my Bioconductor installation? ggtree cannot read any tree
ggtree
updated 6.0 years ago by
markus.riester
▴ 130 • written 6.0 years ago by
martin
• 0
0
votes
1
reply
1.6k
views
tip_glom and annotations?
ggtree
treeio
phyloseq
annotation
tip_glom
updated 6.2 years ago by
Guangchuang Yu
★ 1.2k • written 6.2 years ago by
werdnus
• 0
0
votes
3
replies
3.4k
views
Unable to reroot RAxML tree with ggtree
ggtree
raxml
reroot
tree
6.3 years ago
kevin.liam.keegan
• 0
0
votes
1
reply
1.9k
views
ggtree: time-scaled tree s
phylogenetic
ggtree
calibration
fossils
times-scale
updated 6.7 years ago by
Guangchuang Yu
★ 1.2k • written 6.7 years ago by
aelgorriaga
• 0
1
vote
2
replies
1.7k
views
EBImage cannot read .png images from Image.R
ebimage
ggtree
updated 6.9 years ago by
Andrzej Oleś
▴ 750 • written 6.9 years ago by
benauxier
• 0
2
votes
3
replies
5.2k
views
Error during EBImage installation
ebimage
ggtree
package installation
updated 6.9 years ago by
Andrzej Oleś
▴ 750 • written 6.9 years ago by
slagter.maarten
▴ 10
0
votes
1
reply
2.0k
views
ggtree facet_plot question using geom_boxplot to plot abundance data corresponding to tree tips
ggtree
ggplot2
phyloseq
geom_boxplot
facet_plot
updated 7.1 years ago by
Guangchuang Yu
★ 1.2k • written 7.1 years ago by
matthew.wipperman
• 0
2
votes
7
replies
2.3k
views
Visualize lineage tree using ggtree
ggtree
lineage
7.7 years ago • updated 7.6 years ago
yun YAN
▴ 20
0
votes
1
reply
1.4k
views
Error displayed when trying to annotate tree with boostrap values and Phylopic
ggtree
updated 7.6 years ago by
Guangchuang Yu
★ 1.2k • written 7.6 years ago by
723388
• 0
2
votes
0
replies
1.2k
views
News:
ggtree published in MEE
ggtree
News
7.7 years ago
Guangchuang Yu
★ 1.2k
0
votes
1
reply
2.1k
views
Plotting with ggtree fails after midpoint rooting
ggtree
updated 8.6 years ago by
Guangchuang Yu
★ 1.2k • written 8.6 years ago by
david.wyllie
• 0
5
votes
3
replies
12k
views
ggtree - trouble displaying longer label names
ggtree
updated 8.6 years ago by
Guangchuang Yu
★ 1.2k • written 8.6 years ago by
Alan Smith
▴ 150
9
votes
8
replies
6.7k
views
News:
new package `ggtree` in devel branch
ggtree
phylogenetic
News
updated 9.2 years ago by
remi.tournebize
▴ 10 • written 9.3 years ago by
Guangchuang Yu
★ 1.2k
26 results • Page
1 of 1
Recent ...
Replies
Answer: Dominance Index for Shotgun Metagenomics Data
by
Leo Lahti
▴ 40
1. Note that Simpson's dominance index (\lambda) is a different index than inverse Simpson (1/\lambda) or reciprocal Simpson (1-\lambda). T…
Comment: Math expression in shapeCustom legend in EnhancedVolcano
by
pl23
• 0
Thank you very much - that worked perfectly! Word of warning to those who try this: it screws up the other legends because of the markdown …
Answer: PCA plot suggestions
by
Michael Love
41k
For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
by
ussarizona
▴ 10
Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…
Answer: Deseq2. decontXcounts not integers. Useful alternative?
by
Michael Love
41k
Another option would be to put the per sample estimated contamination in the design. This is for example how RUV etc help remove spurious D…
Votes
Answer: Dominance Index for Shotgun Metagenomics Data
Answer: Math expression in shapeCustom legend in EnhancedVolcano
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
Comment: Deseq2. decontXcounts not integers. Useful alternative?
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
Awards
• All
Popular Question
to
Leo Lahti
▴ 40
Scholar
to
James W. MacDonald
65k
Popular Question
to
shepherl
3.8k
Scholar
to
Michael Love
41k
Supporter
to
JKim
• 0
Locations
• All
Belgium,
16 minutes ago
WEHI, Melbourne, Australia,
18 minutes ago
France,
42 minutes ago
China,
2 hours ago
India,
3 hours ago
Traffic: 563 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6