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Registrations are now open for BioC Asia 2022
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3 months ago • updated 11 weeks ago
Peter Hickey
▴ 630
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171
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News:
European Bioconductor Conference 2023 planning
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3 months ago
Maria Doyle
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BioCAsia Virtual Meeting, 15-18 October 2020
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▴ 1000
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News:
New Bioconductor Community Advisory Board Members for 2021
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BiocVersion
22 months ago
Matthew Ritchie
▴ 1000
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updated 23 months ago by
aedin
• 0 • written 2.0 years ago by
Matthew Ritchie
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23 months ago
Matthew Ritchie
▴ 1000
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Community engagement and outreach award
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written 2.6 years ago by
shepherl
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SUPPORT SITE UPGRADE TODAY -- PLEASE REFRAIN FROM POSTING
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2.3 years ago
shepherl
3.4k
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DESeq2 multiple groups comparison issues, incorrect log2FC results in a small proportion of genes
deseq2
updated 2.2 years ago by
Michael Love
39k • written 2.3 years ago by
helenhuang.math
• 0
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News:
Final List of Deprecated Packages for Bioc3.12
annotation
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2.3 years ago
shepherl
3.4k
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409
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BridgeDbR devel package upgraded to BridgeDb 3
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2.3 years ago
egon.willighagen
▴ 10
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568
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Bioconductor 3.12 db0s, OrgDbs and TxDbs now available
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2.3 years ago
kayla.interdonato
140
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Project-wide Code of Conduct statement for Bioconductor
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Bioconductor
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2.3 years ago
Laurent Gatto
1.6k
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News:
List of Deprecated Packages for Bioc3.12
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2.4 years ago • updated 2.3 years ago
shepherl
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2.3 years ago
shepherl
3.4k
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2.4 years ago
shepherl
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News:
ensembldb EnsDb databases for Ensembl release 101 added to AnnotationHub
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2.4 years ago
Johannes Rainer
★ 2.0k
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Ensembl
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2.4 years ago
mchakiachvili
▴ 20
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James Taylor foundation: scholarships to Biological Data Science 2020 at CSHL
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2.5 years ago
Kasper Daniel Hansen
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updated 18 months ago by
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• 0 • written 2.6 years ago by
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2.8 years ago • updated 2.6 years ago
shepherl
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shepherl
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2.6 years ago
shepherl
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2.6 years ago
shepherl
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Long-term contribution award
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2.6 years ago
shepherl
3.4k
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414
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2.6 years ago
shepherl
3.4k
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397
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List of Deprecated Packages for Bioc3.12
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2.6 years ago
shepherl
3.4k
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429
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2.6 years ago
shepherl
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412
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2.6 years ago
shepherl
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396
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2.7 years ago
shepherl
3.4k
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392
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Updated annotation packages
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2.7 years ago
kayla.interdonato
140
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3.4k
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2.8 years ago • updated 2.7 years ago
shepherl
3.4k
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336
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2.7 years ago
shepherl
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537
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Bioconductor Technical Advisory Board Nominees, 2020
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written 2.7 years ago by
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25k
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397
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Public Calendar of Events
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2.7 years ago
shepherl
3.4k
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579
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ensembldb EnsDb databases for Ensembl release 100 added to AnnotationHub
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2.7 years ago
Johannes Rainer
★ 2.0k
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529
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News:
Issues with annotation packages
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2.7 years ago
kayla.interdonato
140
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3
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550
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News:
Final List of Deprecated Packages for Bioc3.11
software
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News
updated 2.7 years ago by
kayla.interdonato
140 • written 2.8 years ago by
shepherl
3.4k
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411
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News:
Bioconductor 3.11 OrgDb and TxDb packages now available
annotation
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2.7 years ago
kayla.interdonato
140
1
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0
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381
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News:
Ensembl 100 has been released
biomart
ensembl
e100
mart
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2.7 years ago
Thomas Maurel
▴ 790
4
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426
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News:
Bioconductor 3.11 is Released!
software
bioconductor
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2.7 years ago
shepherl
3.4k
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4
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651
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News:
BridgeDb build fails due to website unavailability
bridgedbr
News
3.1 years ago • updated 2.8 years ago
egon.willighagen
▴ 10
0
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0
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457
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News:
Import Deadlines for RELEASE 3.11
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deadline
bioconductor
News
2.8 years ago
shepherl
3.4k
10
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2.2k
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News:
Professor James Taylor
in memoriam
News
2.8 years ago
Martin Morgan
25k
0
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0
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437
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News:
Last Day to Submit New Packages for Bioconductor Release 3.11
deadline
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bioconductor
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2.8 years ago
shepherl
3.4k
2
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0
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458
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News:
Bioconductor Community Advisory Board Members
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bioconductor oversight
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2.8 years ago
Matthew Ritchie
▴ 1000
0
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1
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576
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News:
New Package and New Docker Image Submission Deadline for Bioc Release 3.11
release
package submission
docker
deadline
News
2.9 years ago • updated 2.8 years ago
shepherl
3.4k
0
votes
0
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364
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News:
Deadline for devel branch 3.11 to pass R CMD build and R CMD check
release
devel
bioconductor
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2.8 years ago
shepherl
3.4k
0
votes
0
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339
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News:
Bioconductor Release 3.10 Code Freeze Deadline
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deadline
bioconductor
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2.8 years ago
shepherl
3.4k
0
votes
0
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342
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News:
Bioconductor 3.11 db0s are available
annotation
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2.8 years ago
kayla.interdonato
140
50 results • Page
1 of 1
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Replies
Comment: edgeR: Usage of estimated dispersion from replicates for pools of the same exper
by
k.roelfs
• 0
I felt that my way of analyzing this data set was a bit unfortunate. I was not involved in the experimental design myself and am now trying…
Comment: edgeR: Usage of estimated dispersion from replicates for pools of the same exper
by
k.roelfs
• 0
For tissue T1 and each time point, each replicate corresponds to a single plant. For tissue T2, we actually had to sample 5 plants per rep…
Answer: edgeR: Usage of estimated dispersion from replicates for pools of the same exper
by
Gordon Smyth
47k
> Due to the high degree of heterozygosity of the plants used for the experiment, we thought it best to pool the same tissue under the same…
Comment: edgeR: Usage of estimated dispersion from replicates for pools of the same exper
by
Gordon Smyth
47k
How many plants are used for each of the biological replicate samples? One plant or a few?
Comment: edgeR: Usage of estimated dispersion from replicates for pools of the same exper
by
k.roelfs
• 0
Yes you are right, we have 24 RNA-seq libraries in total. The replicates come from the same population of plants, but independent from tho…
Votes
DESeq2 pairwise comparisons w/ 3 factors
A: DESeq2 pairwise comparisons w/ 3 factors
A: DESeq2 pairwise comparisons w/ 3 factors
Comment: MA plot
Comment: MA plot
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