enotype_or_Disease   1   R
Error in getBM(attributessnp[, 1], filters = c("chr_name", "start", "end"),  : 
  The query to the BioMart webservice returned an invalid result: the number of columns in the result table does not equal the number of attributes in the query. Please report this to the mailing list.

> sessionInfo()
R version 3.2.3 (2015-12-10)
Platform: x86_64-redhat-linux-gnu (64-bit)
Running under: Red Hat Enterprise Linux Server release 6.7 (Santiago)

locale:
 [1] LC_CTYPE=en_US.UTF-8       LC_NUMERIC=C               LC_TIME=en_US.UTF-8        LC_COLLATE=en_US.UTF-8     LC_MONETARY=en_US.UTF-8    LC_MESSAGES=en_US.UTF-8   
 [7] LC_PAPER=en_US.UTF-8       LC_NAME=C                  LC_ADDRESS=C               LC_TELEPHONE=C             LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C       

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base     

other attached packages:
[1] biomaRt_2.26.1 reshape_0.8.5  ggplot2_2.1.0 

loaded via a namespace (and not attached):
 [1] Rcpp_0.12.4          IRanges_2.4.8        XML_3.98-1.4         digest_0.6.9         bitops_1.0-6         grid_3.2.3           plyr_1.8.3           DBI_0.3.1           
 [9] gtable_0.2.0         stats4_3.2.3         RSQLite_1.0.0        scales_0.4.0         S4Vectors_0.8.11     tools_3.2.3          Biobase_2.30.0       munsell_0.4.3       
[17] RCurl_1.95-4.8       parallel_3.2.3       yaml_2.1.13          BiocGenerics_0.16.1  AnnotationDbi_1.32.3 colorspace_1.2-6     knitr_1.12.3        

I am afraid that we have a bug affecting the multiple datasets selection in the release 86 gene mart. This is causing the BiomaRt getLDS function to fail over.

We have a working fix that we will push live early next week, I will let you know as soon as the release 86 gene mart is working again.

In the meantime, please feel free to use our previous release e!85 marts:

human <- useMart("ENSEMBL_MART_ENSEMBL", dataset = "hsapiens_gene_ensembl", host = "e85.ensembl.org")

Apologies for any inconvenience caused,
Best Regards,
Thomas

Dear all,

Just to let you know that we have now pushed a fix to our main website www.ensembl.org, you can access it by running:

human <- useMart("ENSEMBL_MART_ENSEMBL", dataset = "hsapiens_gene_ensembl", host = "www.ensembl.org")
or
human = useMart("ensembl", dataset = "hsapiens_gene_ensembl") 

We will fix the US West, US East and Asian mirrors next week.

Thank you for your patience.
Best Regards,
Thomas

Dear all,

Just to let you know that the US West, US East and Asian mirrors have now been fixed too.

Thank you for your patience.
Best Regards,
Thomas