Question: RnBeads, enrichment analysis
gravatar for gaiusjaugustus
3.0 years ago by
University of Arizona
gaiusjaugustus0 wrote:

Hi, I have completed my first DMR analysis with the 450k array data using RnBeads.  The final differential analysis line of code was:, report.dir)

But an enrichment analysis wasn't run.  Here are my options.

rnb.options(, identifiers.column= "Sample_ID", import.table.separator="\t", "differential.comparison.columns"=c("TumorNormal"), "columns.pairing"=c("TumorNormal"="Sample_Name"), inference.targets.sva=c("Sample_Group"), inference.sva.num.method="be")


I assume that I forgot to put something here, but any help would be appreciated.  I'd like to run my enrichment analysis on my differentially methylated regions (genes).

rnbeads • 501 views
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