Showing : rnbeads • reset
0
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2
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775
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save.rnb.set warnings when trying to save rnb.set
RnBeads RnBeads.hg19 MethylationArray
written 9 months ago by • 0
0
votes
3
replies
1.6k
views
Batch correction using control probes in EPIC array data
RnBeads minfiData minfi EPICarray
updated 24 months ago by ▴ 780 • written 24 months ago by ▴ 10
0
votes
0
replies
674
views
rnbeads inference
epigenetics RnBeads
2.3 years ago Jitendra ▴ 10
0
votes
0
replies
792
views
normalisation options in RnBeads
Epigenetics RnBeads R Bioconducter
3.1 years ago Jitendra ▴ 10
0
votes
0
replies
989
views
filtering options in RnBeads for array data
Epigenetics RnBeads MethylationArrayData methylationArrayAnalysis
3.1 years ago Jitendra ▴ 10
0
votes
8
replies
2.5k
views
error in RnBeads installation
Epigenetics RnBeads R
3.2 years ago • updated 3.1 years ago Jitendra ▴ 10
1
vote
1
reply
1.2k
views
How to export methylation tracks in bed format
RnBeads
updated 4.2 years ago by 68k • written 4.2 years ago by ▴ 10
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votes
0
replies
1.2k
views
How to know the number of detected CpG islands with RnBeads
RnBeads
4.2 years ago Federica ▴ 10
0
votes
0
replies
1.4k
views
How to get illumina CpG IDs by gene name?
MethylationArrayData RnBeads
4.2 years ago D ▴ 10
1
vote
2
replies
2.8k
views
How to install Ghostscript in windows?
RnBeads.hg19 RnBeads
written 4.2 years ago by ▴ 10
2
votes
4
replies
1.6k
views
How to launch the RnBeads Data Juggler?
RnBeads
4.2 years ago Federica ▴ 10
2
votes
9
replies
2.4k
views
Installation of RnBeads package fails on Ubuntu 18.04.5 LTS
RnBeads
updated 3.5 years ago by • 0 • written 4.5 years ago by • 0
2
votes
6
replies
1.8k
views
RnBeads::combine() - error?
RnBeads Rnbeads2.0 RnBeads2
updated 4 months ago by • 0 • written 4.9 years ago by ▴ 10
0
votes
0
replies
1.0k
views
Is rnb.execute.import() has a bug in reading bismarkCytosine formart bed file? coordinates seem to be shifted by 1
RnBeads
5.1 years ago caoy4g4 • 0
0
votes
2
replies
2.4k
views
RnBeads set ghost script environment variable
RnBeads ghostscript
5.5 years ago Kathrin.Klee • 0
1
vote
3
replies
1.6k
views
Obtaining annotated results from rnbeads
rnbeads EPIC
updated 5.9 years ago by ▴ 50 • written 5.9 years ago by ★ 1.1k
0
votes
3
replies
1.5k
views
Trouble creating an RnBeads annotation for rn6 rat genome build
RnBeads rn6 RnBeadsAnnotationCreator
updated 6.3 years ago by ▴ 50 • written 6.3 years ago by • 0
0
votes
1
reply
1.3k
views
RnBeads "The analysis directory does not contain RnBSet objects"
rnbeads
7.0 years ago neuro3030 • 0
0
votes
1
reply
1.7k
views
RnBeads data preprocessing error
RnBeads
updated 7.1 years ago by • 0 • written 7.5 years ago by • 0
0
votes
0
replies
1.3k
views
differential methylation analysis with RnBeads
rnbeads methylation methylationepic dna methylation
7.2 years ago gabrielrfries • 0
1
vote
1
reply
1.8k
views
Error in Rnbeads:Error in logger.error(em) : Could not create file. cannot popen '/usr/bin/which 'gs' 2>/dev/null', probable reason 'Cannot alloca…
R bioconductor rnbeads microarray illimina 450k methylation
7.5 years ago preethibagopi28 ▴ 10
0
votes
0
replies
1.4k
views
Is it possible to use Rnbeads with WGBS data from epigenetics roadmap/ucsc data
rnbeads wgbs
7.7 years ago Theo ▴ 10
0
votes
2
replies
2.7k
views
how to do noob+funnorm+bmiq normalization together in minfi or RnBeads?
minfi RnBeads noob preprocessFunnorm BMIQ
updated 8.1 years ago by ★ 6.5k • written 8.1 years ago by ▴ 10
0
votes
0
replies
1.2k
views
'type = genes' for RnBeads::meth() function
rnbeads
8.3 years ago Tom ▴ 10
0
votes
0
replies
1.6k
views
Importing Infinium data files using RnBeads::rnb.execute.import()
RnBeads
8.4 years ago Habil Zare ▴ 200
0
votes
0
replies
1.2k
views
RnBeads, enrichment analysis
rnbeads
8.5 years ago gaiusjaugustus • 0
0
votes
0
replies
1.8k
views
Issue with finding .idat files when analysing illumina methylation microarrays using RnBeads
rnbeads methylation illumina epic microarray
8.7 years ago rasii • 0
4
votes
4
replies
3.7k
views
How to remove unwanted probes before normalization in 450k data
minfi 450k champ rnbeads
updated 9.1 years ago by 68k • written 9.2 years ago by ▴ 60
0
votes
2
replies
2.6k
views
error nonzero exit
illuminahumanmethylation450k.db rnbeads
updated 9.3 years ago by • 0 • written 9.7 years ago by • 0
0
votes
2
replies
1.7k
views
RnBeads - save state between data crunching and report generation checkpoints within the differential methylation module?
rnbeads xserver headless-r x11
9.3 years ago areyoujokingme • 0
0
votes
0
replies
2.6k
views
RnBeads check.names error:: "formal argument "check.names" matched by multiple actual arguments"
rnbeads software error
9.4 years ago areyoujokingme • 0
2
votes
7
replies
2.4k
views
ggbio, RnBeads and 3.2.2
ggbio rnbeads rversion3.2.2
9.4 years ago areyoujokingme • 0
0
votes
1
reply
1.7k
views
RnBeads - test statistics for rnb.run.differential
RnBeads
updated 9.5 years ago by • 0 • written 9.5 years ago by ▴ 120
0
votes
1
reply
1.5k
views
RnBeads and technical replicates in differential analysis
rnbeads replicates
updated 9.5 years ago by • 0 • written 9.5 years ago by ▴ 40
0
votes
2
replies
2.2k
views
RnBeads - error with 'rnb.run.differential' module
RnBeads illimina 450k methylation
9.5 years ago Brian Smith ▴ 120
1
vote
9
replies
2.6k
views
RnBeads fails with error in version 1.2 with GRanges v1.22.0
RnBeads
updated 9.5 years ago by • 0 • written 9.5 years ago by • 0
1
vote
1
reply
2.0k
views
RnBeads - doesn't produce pdfs
rnbeads illumina450k
updated 9.6 years ago by ▴ 10 • written 9.6 years ago by ▴ 120
0
votes
2
replies
2.0k
views
rnBeads error for the report path
software error rnbeads
updated 9.6 years ago by ★ 8.2k • written 9.6 years ago by • 0
0
votes
1
reply
2.0k
views
RnBeads: Error in as.list.default(data.source) : no method for coercing this S4 class to a vector
rnbeads error as.vector(data) s4vectors s4
9.7 years ago schasse • 0
0
votes
3
replies
3.4k
views
RnBeads cannot locate libjasper.so.1
rnbeads gs ghostscript shared libraries cluster
9.8 years ago bmreilly • 0
2
votes
4
replies
2.8k
views
Package RnBeads not available for R 3.1.2?
RnBeads packages R 3.1.2
9.8 years ago bmreilly • 0
41 results • Page 1 of 1
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Comment: EuroBioC2023 abstract submission is open! by arden • 0
Woohoo! Abstract submission for EuroBioC2023 is open! Time to dust off my research and get those submissions ready. Hope to see some awesom…
Comment: Gene Ontology (GO) Analysis by GA ▴ 10
Thank you!
Comment: DESEQ2 - Correctly altering log2foldchange when switching comparison direction ( by sk • 0
If I use factor to create the Condition_SCR_vs_WT coef, then the other chefs would be Condition_KD1_vs_WT and Condition_KD2_vs_WT, but I ne…
Comment: How to load scRNA-seq data from GEO by petergrahamclark • 0
the paper I'm working off suggests removing all cells where the UMI is less than 2000. I assume we don't have enough data for umi counts. c…
Comment: How to load scRNA-seq data from GEO by Gordon Smyth 52k
I suggest you use readMM() as advised by James, but then do a massive amount of cell filtering before doing any other conversions or creati…
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Comment: How to load scRNA-seq data from GEO
limma correction for tumor purity
limma correction for tumor purity
Answer: limma correction for tumor purity
Answer: limma correction for tumor purity
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