Trying to install the PharmacoGx package on linux and am getting an error that doesn't male a lot of sense:
> biocLite("PharmacoGx")
BioC_mirror: https://bioconductor.org
Using Bioconductor 3.3 (BiocInstaller 1.22.3), R 3.3.1 (2016-06-21).
Installing package(s) ‘PharmacoGx’
Old packages: 'cluster', 'codetools', 'foreign', 'lattice', 'Matrix', 'mgcv',
'survival'
Update all/some/none? [a/s/n]: n
Warning message:
package ‘PharmacoGx’ is not available (for R version 3.3.1)
> sessionInfo()
R version 3.3.1 (2016-06-21)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: CentOS Linux 7 (Core)
locale:
[1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C
[3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8
[5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8
[7] LC_PAPER=en_US.UTF-8 LC_NAME=C
[9] LC_ADDRESS=C LC_TELEPHONE=C
[11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] devtools_1.12.0 BiocInstaller_1.22.3
loaded via a namespace (and not attached):
[1] tools_3.3.1 withr_1.0.2 memoise_1.0.0 digest_0.6.10
Note - I already updated the 'cluster', 'codetools', 'foreign', 'lattice', 'Matrix', 'mgcv',
'survival' in previous attempts hence the decline to update them above.
