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Installation
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0
votes
2
replies
161
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cannot install various functions in R
GRanges
packages
installation
updated 13 days ago by
shepherl
3.1k • written 13 days ago by
Eli
• 0
0
votes
3
replies
242
views
More Bioconductor Package Installation Problems
package
symlinks
directories
installation
Dropbox
updated 6 weeks ago by
Hervé Pagès
15k • written 6 weeks ago by
jose
▴ 10
1
vote
6
replies
312
views
Bioconductor installation problems
packages
installation
Bioconductor
updating
updated 7 weeks ago by
Marcel Ramos
570 • written 8 weeks ago by
jose
▴ 10
1
vote
1
reply
129
views
list installed packages
Installation
updated 12 weeks ago by
James W. MacDonald
59k • written 12 weeks ago by
dmahoney
• 0
11
votes
11
replies
5.9k
views
cannot install edgeR on M1 Mac
apple
m1
installation
silicon
updated 4 months ago by
Gordon Smyth
45k • written 10 months ago by
Brian
▴ 90
1
vote
5
replies
616
views
Problem with DESeq2 installation using in R 1.4.1717
DESeq2
Problem
installation
with
updated 10 months ago by
Lluís Revilla Sancho
▴ 660 • written 10 months ago by
Nahid
• 0
1
vote
1
reply
918
views
Installing hdf5r without admin access
hdf5r
installation
updated 10 months ago by
Hervé Pagès
15k • written 10 months ago by
snp31
• 0
0
votes
1
reply
514
views
BiocManager.rdb is corrupt
Installation
updated 10 months ago by
James W. MacDonald
59k • written 10 months ago by
gray
• 0
2
votes
2
replies
1.8k
views
Unable to install packages on MacOS
macos
installation
updated 12 months ago by
Kevin Blighe
3.5k • written 12 months ago by
Joe
▴ 10
2
votes
2
replies
514
views
loading scran package
scran
installation
15 months ago
TJ
• 0
2
votes
2
replies
465
views
Feature request: Freezing Bioconductor packages to a specific date
installation
time machine
mran
rspm
updated 20 months ago by
Martin Morgan
25k • written 20 months ago by
Michael Steinbaugh
▴ 70
1
vote
3
replies
387
views
unable to install DESeq2 there is no package called XML
deseq2
bioconductor
windows
xml
installation
updated 22 months ago by
Michael Love
36k • written 22 months ago by
sarah3
• 0
0
votes
1
reply
602
views
ensembldb package installation issue
ensembldb
package
installation
BiocManager
updated 22 months ago by
Kevin Blighe
3.5k • written 22 months ago by
dylangagler
• 0
3
votes
3
replies
547
views
Incomplete Install of Bioconductor Packages
Installation
Packages
Missing
updated 22 months ago by
Laurent Gatto
1.5k • written 2.0 years ago by
sreedta8
▴ 10
1
vote
3
replies
1.4k
views
installation failure with BiocManager (URL status was 'Couldn't resolve proxy name')
bioconductor
installation
proxy
BiocManager
updated 23 months ago by
Martin Morgan
25k • written 23 months ago by
chen
• 0
2
votes
8
replies
794
views
DelayedArray loading Warning causes stop in Bioconductor 3.12
DelayedArray
warning
installation
updated 23 months ago by
Hervé Pagès
15k • written 23 months ago by
inzirio
▴ 10
0
votes
1
reply
413
views
Difficulty Installing Bioconductor
Installation
updated 24 months ago by
Martin Morgan
25k • written 24 months ago by
terrylthomas2804
• 0
1
vote
3
replies
1.9k
views
"Permission denied" when installing TCGAbiolinks and RTCGAToolbox
installation
permission denied
RTCGAToolbox
TCGAbiolinks
2.0 years ago
julia.tutzauer
• 0
3
votes
4
replies
545
views
Can't install packages on R or via Bioconductor
R
installation
packages
annotatr
biocmanager
2.1 years ago
dakarai_esgdaille
▴ 10
0
votes
2
replies
320
views
Problems while installing HTSeqGenie and gmapR
software error
HTSeq
installation
updated 2.2 years ago by
Martin Morgan
25k • written 2.2 years ago by
eric33150
• 0
0
votes
2
replies
563
views
Unable to install package
packages
installation
GenomeGraphs
updated 2.3 years ago by
James W. MacDonald
59k • written 2.3 years ago by
alex
• 0
5
votes
5
replies
283
views
Installation: go to specific version of a package prompted
software error
installation
updated 2.4 years ago by
James W. MacDonald
59k • written 2.4 years ago by
GENOMIC_region
• 0
4
votes
5
replies
981
views
Downgrading R to 3.6.0 version (GOseq problem)
goseq
installation
2.4 years ago
gdalsky
▴ 40
2
votes
2
replies
442
views
How to write the installation section in the vignette of a package that has not been sent into Bioconductor yet
newpackage
vignette
installation
updated 2.6 years ago by
shepherl
3.1k • written 2.6 years ago by
Krutik Patel
▴ 10
0
votes
6
replies
4.8k
views
Rhtslib - install error
Rhtslib
installation
error
zlib
updated 2.7 years ago by
leoadam014
• 0 • written 3.6 years ago by
boboshaq
• 0
0
votes
3
replies
697
views
Can't install Genesis
Genesis
Installation
updated 2.8 years ago by
Mike Smith
★ 5.5k • written 2.8 years ago by
winstondunnmd
• 0
1
vote
4
replies
637
views
flowCore install missing a dependency?
flowCore
Installation
dependency
updated 3.0 years ago by
Jake Wagner
▴ 280 • written 3.0 years ago by
Robert Baer
▴ 70
0
votes
1
reply
462
views
ChemmineOB Installation RHEL
ChemmineOB
Linux
Installation
3.2 years ago
jandrosavich
• 0
0
votes
1
reply
560
views
Error when install bioconductor on Mac 10.12 Sierra
installation
updated 3.5 years ago by
Martin Morgan
25k • written 3.5 years ago by
thatwasfunny
• 0
1
vote
1
reply
589
views
GenomicFeatures won't install for 3.8 release
installation
biocmanager
updated 3.5 years ago by
shepherl
3.1k • written 3.5 years ago by
Michael Steinbaugh
▴ 70
0
votes
4
replies
1.0k
views
BiocManager::install() breaks; can't install bioc-devel
biocmanager
installation
3.7 years ago
Kyle Johnsen
▴ 20
0
votes
2
replies
3.5k
views
Is there a way to specify where BiocInstaller will install packages similar to the "lib=...." for install.packages?
biocinstaller
custom library path
installation
package installation
updated 3.7 years ago by
James W. MacDonald
59k • written 3.7 years ago by
ariel
▴ 10
0
votes
1
reply
578
views
DelayedArray install fails to UNC path
delayedarray
bug
installation
updated 3.8 years ago by
Martin Morgan
25k • written 3.9 years ago by
simon.andrews
• 0
0
votes
1
reply
1.1k
views
install ChAMP under Ubuntu 18.04 in R 3.4.4 with error "maximal number of DLLs reached..."
ChAMP
software error
installation
3.9 years ago
chxp
• 0
0
votes
3
replies
1.5k
views
Dependency installation error due to no longer available CRAN packages ('rngtools', 'pkgmaker')
installation
minfi
bumphunter
updated 4.0 years ago by
Peter Hickey
▴ 550 • written 4.0 years ago by
muellerf
• 0
0
votes
2
replies
993
views
reactome.db install problem
installation
4.0 years ago
xinfu.xia
• 0
2
votes
3
replies
691
views
Cannot install Rhtslib on Mac OS 10.13
rhstlib
installation
compilation error
4.1 years ago
Ryan C. Thompson
7.8k
0
votes
1
reply
838
views
Install package phyloseq
installation
phyloseq
updated 4.2 years ago by
Martin Morgan
25k • written 4.2 years ago by
layeb
• 0
1
vote
1
reply
2.5k
views
Cannot use Bioconductor with new conda R installation?
bioconductor
biocinstaller
installation
conda
4.2 years ago
jol.espinoz
▴ 40
6
votes
2
replies
1.2k
views
Is there a way to tell biocLite() to install a Bioconductor package only if it is not installed already?
bioclite
package installation
installation
install
updated 4.3 years ago by
Mike Smith
★ 5.5k • written 4.3 years ago by
cristian
▴ 10
0
votes
3
replies
2.0k
views
ERROR: compilation failed for package RSQLite
ubuntu
installation
updated 4.4 years ago by
Martin Morgan
25k • written 4.4 years ago by
jsalsager
▴ 40
0
votes
1
reply
2.1k
views
installation of package 'goseq' had non-zero exit status
goseq
installation
updated 4.4 years ago by
Martin Morgan
25k • written 4.4 years ago by
philipp.voss
• 0
0
votes
1
reply
677
views
Issues installing "CardinalWorkflows"
installation
CardinalWorkflows
Imaging mass spectrometry
Cardinal
updated 4.5 years ago by
Valerie Obenchain
★ 6.7k • written 4.5 years ago by
xander.spotbeen
• 0
1
vote
0
replies
622
views
Reinstalling failing - Check packages for root user, too
biocinstaller
root
installation
installation problem
4.6 years ago
charles.tilford
▴ 10
0
votes
0
replies
624
views
Problem with ade4 when upgrading to Rstudio 1.1 and OpenR 3.4
phyloseq
installation
ade4
macos
4.6 years ago
sprague
• 0
3
votes
17
replies
13k
views
DESeq2 installation error
installation
updated 4.6 years ago by
Cheng-Yuan Kao
▴ 80 • written 6.8 years ago by
seeker
• 0
1
vote
1
reply
721
views
Error Installing Gviz
installation
4.6 years ago
pederworning
• 0
0
votes
5
replies
2.0k
views
Problem installing Bioconductor package AnnotationDbi on Mac OSX
annotiondbi
installation
dyn.load error
4.7 years ago
cristian
▴ 10
8
votes
5
replies
1.4k
views
Trouble installing bioconductor
biocinstaller
installation
updated 4.7 years ago by
Martin Morgan
25k • written 4.7 years ago by
will.b.porterfield
▴ 50
1
vote
4
replies
1.0k
views
Rsubread install problems on CentOS 6.8/R3.4.1/gcc/4.8.2
linux
rsubread
installation
updated 4.8 years ago by
Mike Smith
★ 5.5k • written 4.8 years ago by
hjmangalam
• 0
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Comment: Methods for removing unexpressed probes of Affymetrix Human Genome U219 Array
by
James W. MacDonald
59k
We have progressed past the point where I show you how to do things using Bioconductor packages, and into the realm where I start telling y…
Comment: Methods for removing unexpressed probes of Affymetrix Human Genome U219 Array
by
Yang Shi
• 0
Thanks sir! As your mentioned here, 12-15 means cutoff value about 4? Could I select the reflection point as the "point" that starts to ha…
Comment: Methods for removing unexpressed probes of Affymetrix Human Genome U219 Array
by
James W. MacDonald
59k
It's a non-scientific selection. The Nonspecific probes are meant to be sequences that are not found in nature, so any binding is due to cr…
Comment: Methods for removing unexpressed probes of Affymetrix Human Genome U219 Array
by
Yang Shi
• 0
Thanks for your excellent reply sir! But there are still some points confused me. (1).dbGetQuery get 93 kinds of probes. Would be okay for …
Comment: Print EnhancedVolcano Plot as jpeg or similar in R Notebook
by
Kevin Blighe
3.5k
Great! problem solved, then?
Votes
Answer: Methods for removing unexpressed probes of Affymetrix Human Genome U219 Array
Answer: Methods for removing unexpressed probes of Affymetrix Human Genome U219 Array
Comment: Quantile Normalization after rma or not?
Comment: Print EnhancedVolcano Plot as jpeg or similar in R Notebook
Comment: How to best visualize multi-level transcriptomics experiment data?
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