Drug datasets for RNA-seq
1
0
Entering edit mode
@bioinformatics-11531
Last seen 7.5 years ago

​Hello everyone !

We have done an rna-seq experiment and found some differentially expressed(de) genes. We want to test some drugs in our lab to find interesting ones for further analysis. Because there are so many drugs it would be cool to compare the differentially expressed genes we found to already available drug data. Then we could use the drugs that seem to be ( more ) potential in an experiment.

​So maybe we can perform de analysis on a list of drugs to see if there is some kind of overlap, or maybe there is already a list like this available. So we were wondering if someone knows of a good source that has a collection of this data, or some other way to do this.

​Regards,

rna-seq data • 1.4k views
ADD COMMENT
0
Entering edit mode
@gordon-smyth
Last seen 45 minutes ago
WEHI, Melbourne, Australia

https://portals.broadinstitute.org/cmap/

ADD COMMENT

Login before adding your answer.

Traffic: 589 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6