Biostar Data

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data immunology software vaccinology

12 days ago Daniel • 0

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101

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TCGAbiolinks data normalize l

updated 7 weeks ago by Kevin Blighe 3.4k • written 7 weeks ago by DANIELA • 0

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652

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data package submission BiocCheck

2.2 years ago • updated 2.1 years ago j.flesch ▴ 10

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438

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package data

3.1 years ago divyswar01 • 0

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326

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cellGrowth data

3.4 years ago muitalegal888 • 0

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669

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omiccircos bug hg19 hg18 data

4.4 years ago matthew.bashton • 0

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648

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transform flow cytometry data

updated 4.7 years ago by SamGG ▴ 270 • written 4.7 years ago by cr • 0

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687

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rna-seq data

updated 4.7 years ago by Gordon Smyth 43k • written 4.7 years ago by bioinformatics ▴ 10

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697

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edger data analysis

6.2 years ago Pau Marc Muñoz Torres ▴ 20

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704

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data

6.3 years ago Bogdan ▴ 620

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1.7k

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biseq fdr data results

6.5 years ago • updated 6.4 years ago mnaymik ▴ 10

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1.3k

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flowCore flowjo data

updated 6.8 years ago by Greg Finak ▴ 150 • written 6.8 years ago by AJC ▴ 10

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2.4k

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limma export log2 data agilent

updated 6.9 years ago by James W. MacDonald 58k • written 6.9 years ago by Jahn Davik ▴ 110

13 results • Page 1 of 1

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Comment: Per gene Covariates by Michael Love 34k

If you have per gene and per sample corrections, you can use normalization factors (see DESeq2 paper and vignette first on this topic). Fo…

Comment: deseq2 machine sizing best practices for very large data set by Michael Love 34k

I recommend and use limma-voom for large bulk datasets often, it is much faster than GLM-based methods.

Comment: branchpointer: trouble to read gtf by b.signal • 0

Hi Frank, Your example gtf is missing a gene_id. In the old code we also required a transcript_type/transcript_biotype, and a gene_type/g…

Comment: deseq2 machine sizing best practices for very large data set by ATpoint ▴ 840

https://support.bioconductor.org/p/73399/#73400

Comment: Per gene Covariates by Paola • 0

Hi Michael, I have a similar problem where we want to run a LRT analysis on RNA-Seq to find differences across 4 groups and correcting for…

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Answer: Format roxgen comment (alternative to formatR)

Format roxgen comment (alternative to formatR)

Answer: Format roxgen comment (alternative to formatR)

How does DESeq2 handle zero counts in one condition?

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Scholar to Mike Smith ★ 5.1k

Scholar to Gordon Smyth 43k

Popular Question to Dario Strbenac ★ 1.5k

Popular Question to Hans-Ulrich Klein ▴ 330