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1
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525
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Dealing With Package Sizes Greater than 5 MB
data package submission BiocCheck
22 months ago j.flesch ▴ 10
2
votes
1
reply
398
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Curated Data Package in Bioconductor
package data
2.8 years ago divyswar01 • 0
0
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0
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292
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Data for cellGrowth package
cellGrowth data
3.2 years ago muitalegal888 • 0
0
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0
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617
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OmicCircos: included UCSC.hg19.chr dataframe is actually hg18 cytobands
omiccircos bug hg19 hg18 data
4.1 years ago matthew.bashton • 0
0
votes
1
reply
601
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Transform data from MoFlo Astrios
transform flow cytometry data
updated 4.4 years ago by ▴ 270 • written 4.4 years ago by • 0
0
votes
1
reply
653
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Drug datasets for RNA-seq
rna-seq data
updated 4.5 years ago by 43k • written 4.5 years ago by ▴ 10
2
votes
4
replies
643
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edgeR, data processing with some missed values
edger data analysis
6.0 years ago Pau Marc Muñoz Torres ▴ 20
1
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2
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664
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about transforming a data.frame
data
6.0 years ago Bogdan ▴ 610
2
votes
15
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1.5k
views
BiSeq trimClusters FDR.loc confusion
biseq fdr data results
6.2 years ago • updated 6.1 years ago mnaymik ▴ 10
1
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2
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1.2k
views
data() doesn't work for fcs files?
flowCore flowjo data
updated 6.6 years ago by ▴ 150 • written 6.6 years ago by ▴ 10
2
votes
4
replies
2.3k
views
exporting limma log2 data
limma export log2 data agilent
updated 6.7 years ago by 57k • written 6.7 years ago by ▴ 110
11 results • Page 1 of 1
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Comment: DESeq2: Variable Importance by lolol • 0
Ah yes, I see the deviance now in mcols. Would I use this to calculate the pseudo R-squared (McFaddens), comparing each model with a single…
Answer: How to do annotation with Limma by Guido Hooiveld ★ 3.0k
For the HTA2.0 arrays should not use `hgu95av2.db`, which is the annotation library for the, ehh, human U95 set of Affymetrix arrays! You s…
Comment: DESeq2: Variable Importance by Michael Love 33k
Yes, `deviance` is an output in the `mcols`, so you could rotate through variables, excluding them in the LRT. Or you could use the other p…
Answer: Hard coding in DiffBind DBA.R line 968 by Rory Stark ★ 3.9k
Thank you for noticing and reporting this potential issue relating to the minimum number of sample replicates required to form a contrast. …
Comment: DESeq2: Variable Importance by lolol • 0
When you say observing the deviance, you mean utilizing the likelihood ratio test with the reduced model (exclude the last variable). Am I …
Votes
Answer: How to do annotation with Limma
Final List of Deprecated Packages for Bioc3.13
Answer: RNAseq : identical sample-sample distances after using limma::removeBatchEffect
Answer: RNAseq : identical sample-sample distances after using limma::removeBatchEffect
Comment: Use of arrayWeights with two treatment groups
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