Question: Drug datasets for RNA-seq
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gravatar for bioinformatics
2.9 years ago by
bioinformatics10 wrote:

​Hello everyone !

We have done an rna-seq experiment and found some differentially expressed(de) genes. We want to test some drugs in our lab to find interesting ones for further analysis. Because there are so many drugs it would be cool to compare the differentially expressed genes we found to already available drug data. Then we could use the drugs that seem to be ( more ) potential in an experiment.

​So maybe we can perform de analysis on a list of drugs to see if there is some kind of overlap, or maybe there is already a list like this available. So we were wondering if someone knows of a good source that has a collection of this data, or some other way to do this.

​Regards,

data rna-seq • 561 views
ADD COMMENTlink modified 2.9 years ago by Gordon Smyth39k • written 2.9 years ago by bioinformatics10
Answer: Drug datasets for RNA-seq
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gravatar for Gordon Smyth
2.9 years ago by
Gordon Smyth39k
Walter and Eliza Hall Institute of Medical Research, Melbourne, Australia
Gordon Smyth39k wrote:

https://portals.broadinstitute.org/cmap/

ADD COMMENTlink written 2.9 years ago by Gordon Smyth39k
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