Setting threshold with gage for gene set analysis
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jd348 • 0
@user-24862
Last seen 20 hours ago
Durham

Hello, I am using the gage package with RNA-seq data prepared with the Deseq2 package. Should I use a threshold of either Log2FoldChange or p adjusted values for my differentially expressed genes when performing GO/Kegg pathway analysis using gage?

Any help would be greatly appreciated!

gage gageData • 134 views
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