Bioconductor GageData

Showing : gageData • reset

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236

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kegg.gsets gageData gage KEGG

12 weeks ago cereyredondo • 0

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910

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gage RNASeq gageData Pathways

2.5 years ago OST • 0

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1.8k

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KEGG gage gageData pathview

updated 3.6 years ago by Luo Weijun ★ 1.6k • written 3.6 years ago by MOHAMMAD • 0

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gage gageData

3.6 years ago jd348 • 0

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1.3k

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gage pathview gageData

written 3.7 years ago by Emilia ▴ 40

5 results • Page 1 of 1

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Comment: heatmap with batch effect by James W. MacDonald 67k

When you use `removeBatchEffect` it is simply computing the mean expression for each group and subtracting that out. If you have variabilit…

Comment: Highly DE genes but small count difference within conditions by bioshot.com • 0

These are the MA plot for design=~sex+genotype and boxplots with `boxplot(log10(counts(dds)+1))` ![MA plot][1] ![sample_boxplot][2] ![box][…

Comment: miRTarRnaseq library by María Calvo • 0

Hello, Im using "Part3- Identify significant miRNA mRNA relationships for 2 time points from fold changes". In mRNA data and miRNA data, th…

Comment: heatmap with batch effect by tothuhien • 0

Hi, thank you very much for your reply. Yes what you said is true. Sorry I forgot to say that this is a just subset of samples. There are m…

Comment: Highly DE genes but small count difference within conditions by Michael Love 42k

TPM is not a robust scaling method and can be influenced by changes in global distribution. What do you get with an MA plot. Can you high…

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GSVA ssGSEA vs. Broad implementation of ssGSEA

Answer: How to control batch effect if Group and batch are same?

Comment: Convert HGVS Representation back to Reference Genome Coordinates

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