Question

Program not properly installed/program not accessible by system

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hoonhuiyi • 0

@hoonhuiyi-23342

Last seen 4.5 years ago

How do I install a program properly ( Oligoarrayaux) such that a software(decipher using R) is able to access the program? Should I put the installed program in the same file folder etc?

> system("hybrid-min -V") 
[1] 127
> system("OligoArrayAux") 
[1] 127
> primers <- DesignPrimers(tiles, identifier="Accumulibacter",minCoverage=1, minGroupCoverage=1) 
Error in DesignPrimers(tiles, identifier = "Accumulibacter", minCoverage = 1, : OligoArrayAux must be properly installed.

R decipher • 2.0k views

ADD COMMENT • link updated 3.7 years ago by Erik Wright ▴ 150 • written 4.6 years ago by hoonhuiyi • 0

score 0 · Answer 1 · 2020-04-18

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Erik Wright ▴ 150

@erik-wright-14386

Last seen 6 months ago

United States

OligoArrayAux needs to be installed in your system's PATH, which is platform dependent.

ADD COMMENT • link 4.6 years ago Erik Wright ▴ 150

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thank you i have managed to installed it

ADD REPLY • link 4.6 years ago hoonhuiyi • 0

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I am facing the same problem with the OligoArrayAux installation, but so far I could not manage to install it properly. I am using Windows 10 and even adapted the systems' Path to the OligoArrayAux location. Do you have any idea what might be wrong?

ADD REPLY • link 4.0 years ago alexandrawagner.deg • 0

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Me too, I downloaded the OligoArrayAux from UNAFold web server (http://www.unafold.org/Dinamelt/software/oligoarrayaux.php), but still get the error message: "OligoArrayAux must be properly installed". Could you please help?

ADD REPLY • link 3.7 years ago Albert L • 0

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If OligoArrayAux (or UNAFold) are properly installed, it should be possible within R to run: system("hybrid-min -h") without an error.

ADD REPLY • link 3.7 years ago Erik Wright ▴ 150