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Showing :
decipher
•
reset
0
votes
0
replies
88
views
Updating 16S training set with LearnTaxa
DECIPHER
8 weeks ago
Connor
• 0
0
votes
3
replies
238
views
Problem with multiple sequence alignment using AlignSeqs
R
dada2
DECIPHER
updated 8 weeks ago by
Erik Wright
▴ 150 • written 9 weeks ago by
Nelli
• 0
0
votes
1
reply
167
views
OligoArrayAux fails to compile
DECIPHER
11 weeks ago • updated 10 weeks ago
fabian.roger08
▴ 10
0
votes
3
replies
604
views
Issue::DesignPrimers DECIPHER
DECIPHER
DesignPrimers
updated 16 months ago by
slwmartin
• 0 • written 17 months ago by
Mailys
• 0
0
votes
1
reply
399
views
ORF finding in DECIPHER
ORF
DECIPHER
ORFhunteR
updated 20 months ago by
Erik Wright
▴ 150 • written 20 months ago by
tkirkland
• 0
0
votes
5
replies
1.3k
views
Do DECIPHER:IdTaxa / dada2::assignTaxonomy work with ambigious reference training set?
decipher
dada2
updated 20 months ago by
fabian.roger08
▴ 10 • written 3.0 years ago by
fabian.roger
• 0
0
votes
5
replies
769
views
DECIPHER maximum allowable size
DECIPHER
Alignment
alig
updated 20 months ago by
Erik Wright
▴ 150 • written 21 months ago by
curiousmind007
• 0
0
votes
0
replies
527
views
DECIPHER Package on dada2 -Implementing Silva_metaxa2 training set from qza file into a fastq.gz/.Rdata
DECIPHER
dada2
22 months ago
anrongloh
• 0
0
votes
1
reply
442
views
Defining groups in Decipher by sequence position in the database (FASTA)
DefiningGroups
RStudio
DECIPHER
Specificprimers
updated 23 months ago by
Erik Wright
▴ 150 • written 23 months ago by
noeliaruizalonso23
• 0
0
votes
5
replies
1.2k
views
Program not properly installed/program not accessible by system
R
decipher
updated 22 months ago by
Erik Wright
▴ 150 • written 2.8 years ago by
hoonhuiyi
• 0
0
votes
0
replies
405
views
DECIPHER Probe Design Questions
DECIPHER
2.2 years ago
henry1995910343
• 0
0
votes
2
replies
405
views
insufficient alignment
DECIPHER
Alignment
2.2 years ago
julius_vn
• 0
0
votes
3
replies
874
views
DECIPHER save alignement in outputs
msa
decipher
output
prettyPrint
updated 2.4 years ago by
UBodenhofer
▴ 290 • written 2.4 years ago by
matamunee
• 0
1
vote
6
replies
1.1k
views
Issue with DECIPHER::IdTaxa
DECIPHER
IdTaxa
2.4 years ago
sebastian.mynott
• 0
0
votes
1
reply
385
views
convert sequences disambiguated with DECIPHER back to FASTA
DECIPHER
FASTA
disambiguate
2.7 years ago
joannew
• 0
0
votes
2
replies
457
views
how to design probes using decipher
R
decipher
2.8 years ago
hoonhuiyi
• 0
0
votes
5
replies
2.5k
views
Error in (function (classes, fdef, mtable)
software error
DECIPHER
updated 2.8 years ago by
shepherl
3.4k • written 2.8 years ago by
hoonhuiyi
• 0
0
votes
21
replies
1.3k
views
How to use DECIPHER to design group-specific primers
Decipher
2.8 years ago
hoonhuiyi
• 0
0
votes
1
reply
503
views
DECIPHER::AlignSeqs fails with a large guide tree
DECIPHER
updated 3.1 years ago by
Erik Wright
▴ 150 • written 3.1 years ago by
brendan.furneaux
▴ 10
0
votes
1
reply
414
views
PCR simulation with PNAs
PCR
DECIPHER
PNA
3.4 years ago
marissaruthlee
• 0
1
vote
2
replies
829
views
Display BrowseSeqs output in R Notebook?
BrowseSeqs
DECIPHER
notebook
rmarkdown
updated 3.4 years ago by
Erik Wright
▴ 150 • written 3.4 years ago by
lauren.fitch
• 0
0
votes
0
replies
407
views
Alignment larger than the maximum allowable size
DECIPHER
updated 3.6 years ago by
shepherl
3.4k • written 3.6 years ago by
cmasembe
• 0
2
votes
4
replies
956
views
How to get sequence homology percent from a multiple sequence alignment in DECIPHER?
decipher
r
protein alignment
4.8 years ago
reubenmcgregor88
• 0
2
votes
2
replies
1.2k
views
How to combine sequences from different stringsets?
biostrings
decipher
updated 5.0 years ago by
Mike Smith
★ 5.9k • written 5.0 years ago by
reubenmcgregor88
• 0
1
vote
3
replies
819
views
Transform index to chromosome in DECIPHER package
decipher
updated 5.1 years ago by
Erik Wright
▴ 150 • written 5.1 years ago by
Vinicius Henrique da Silva
▴ 40
5
votes
7
replies
985
views
Is it possible to do an alignment to a chosen reference sequence in DECIPHER?
R
decipher
biostrings
updated 5.1 years ago by
Erik Wright
▴ 150 • written 5.1 years ago by
reubenmcgregor88
• 0
0
votes
2
replies
682
views
Is it possible to import many .tsr sequence file into R using bio strings for use in DECIPHER?
r
biostrings
decipher
5.1 years ago
reubenmcgregor88
• 0
2
votes
5
replies
1.0k
views
Colour a phylogenetic tree, based on column in DECIPHER?
r
decipher
biostrings
updated 5.1 years ago by
Erik Wright
▴ 150 • written 5.1 years ago by
reubenmcgregor88
• 0
2
votes
3
replies
1.2k
views
Is it possible to import a multiple fasta alignemnt (.mfa) file into DECIPHER?
decipher
DNA
biostrings
updated 5.1 years ago by
Erik Wright
▴ 150 • written 5.1 years ago by
reubenmcgregor88
• 0
0
votes
1
reply
852
views
DECIPHER - AlignSeqs error is.leaf(dend) node stack overflow
decipher
alignment
updated 5.3 years ago by
Erik Wright
▴ 10 • written 5.3 years ago by
emma.berdan
• 0
0
votes
1
reply
1.2k
views
AlignSeqs error: protect(): protection stack overflow
multiplealignment
decipher
5.3 years ago
c.l.frankling
• 0
2
votes
5
replies
1.3k
views
Multiple Sequence Alignment using DNA sequence
msa
decipher
5.7 years ago
bbista91
▴ 10
1
vote
5
replies
1.0k
views
DECIPHER version bug using biocLite()
DECIPHER
6.7 years ago
Vinicius Henrique da Silva
▴ 40
0
votes
1
reply
720
views
Possible bug in ConsensusSequence
DECIPHER
updated 6.8 years ago by
Erik Wright
▴ 10 • written 6.8 years ago by
rob.lanfear
• 0
0
votes
3
replies
2.2k
views
mt.teststat
multtest
DECIPHER
multtest
DECIPHER
updated 7.1 years ago by
Smeeta Shrestha
▴ 20 • written 19.8 years ago by
Park, Richard
▴ 220
0
votes
0
replies
1.2k
views
Job: Bioinformatics Postdoc Position at the IMB, Mainz
Genetics
DECIPHER
Genetics
DECIPHER
8.9 years ago
Kathi Zarnack
▴ 110
0
votes
1
reply
812
views
Agi4x44PreProcess: Replicated Genes and Custom Annotation Database
Annotation
zebrafish
probe
DECIPHER
Annotation
zebrafish
probe
DECIPHER
updated 12.5 years ago by
Marc Carlson
★ 7.2k • written 12.5 years ago by
Samantha England
▴ 40
0
votes
1
reply
1.5k
views
boxplot error with expression set using oligo package and Human gene st 1.0 arrays
oligo
DECIPHER
oligo
DECIPHER
updated 12.7 years ago by
Benilton Carvalho
★ 4.3k • written 12.7 years ago by
jos matejus
▴ 30
0
votes
0
replies
887
views
Basic Question about gcrma & exporting to excel > (command not working)
Microarray
affy
gcrma
oligo
arrayQualityMetrics
DECIPHER
Microarray
affy
gcrma
oligo
12.7 years ago
Dick Beyer
★ 1.4k
0
votes
0
replies
1.1k
views
'Heat Map for Genes in Dataset' in the '(project name).global.plots.pdf' output of the R-GSEA code
Genetics
Clustering
DECIPHER
Genetics
Clustering
DECIPHER
12.9 years ago
Radek Blatny
▴ 60
0
votes
0
replies
1.3k
views
Post-doc position in Paris
Sequencing
Epigenetics
Cancer
Breast
DECIPHER
Sequencing
Epigenetics
Cancer
Breast
13.6 years ago
Joern Toedling
▴ 450
0
votes
4
replies
971
views
help with large Rgraphviz output
graph
DECIPHER
graph
DECIPHER
updated 16.7 years ago by
Seth Falcon
★ 7.4k • written 16.7 years ago by
Kimpel, Mark W
▴ 890
42 results • Page
1 of 1
Recent ...
Replies
Comment: TCGA: clinical data and expression data
by
sharifnstu1203002m
• 0
Hello, I am in the same problem. I downloaded "transcriptome profiling" data of TCGA by using the Bioconductor package. I get my gene expr…
Comment: How to normalize long-read RNA-seq data for comparison with short-reads
by
Jonathan Göke
▴ 40
Great to hear that you are using Bambu. Yes, I think that part of your question does not have one correct answer, there are many ways in wh…
Answer: Library sizes of miRNA sequencing data and TMM normalization with Edge-R
by
Gordon Smyth
47k
Choosing which samples to normalize together is not dependent on library size but rather on (1) whether the tissue samples are comparable a…
Comment: Atena package - error (new user)
by
lalanis1
• 0
Thanks a lot, Calvo. Will run my files with revised version soon! Best regards, Lalani
Comment: Nested paired design with covariates in limma
by
Gordon Smyth
47k
Please post a new question with enough detail to answer your question. If you want bespoke advance, then you need to post the details of yo…
Votes
Comment: How to normalize long-read RNA-seq data for comparison with short-reads
Answer: Library sizes of miRNA sequencing data and TMM normalization with Edge-R
C: Can't install TopmedPipeline Package
Comment: Question about GWASTools gdsSubset
Comment: How to normalize long-read RNA-seq data for comparison with short-reads
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