Showing : decipher • reset
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ORF finding in DECIPHER
ORF DECIPHER ORFhunteR
updated 6 weeks ago by ▴ 150 • written 6 weeks ago by • 0
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5
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394
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Do DECIPHER:IdTaxa / dada2::assignTaxonomy work with ambigious reference training set?
decipher dada2
updated 7 weeks ago by ▴ 10 • written 17 months ago by • 0
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5
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200
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DECIPHER maximum allowable size
DECIPHER Alignment alig
updated 9 weeks ago by ▴ 150 • written 10 weeks ago by • 0
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110
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DECIPHER Package on dada2 -Implementing Silva_metaxa2 training set from qza file into a fastq.gz/.Rdata
DECIPHER dada2
3 months ago anrongloh • 0
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1
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Defining groups in Decipher by sequence position in the database (FASTA)
DefiningGroups RStudio DECIPHER Specificprimers
updated 5 months ago by ▴ 150 • written 5 months ago by • 0
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5
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398
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Program not properly installed/program not accessible by system
R decipher
updated 4 months ago by ▴ 150 • written 15 months ago by • 0
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DECIPHER Probe Design Questions
DECIPHER
8 months ago henry1995910343 • 0
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2
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151
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insufficient alignment
DECIPHER Alignment
8 months ago julius_vn • 0
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3
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240
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DECIPHER save alignement in outputs
msa decipher output prettyPrint
updated 10 months ago by ▴ 260 • written 10 months ago by • 0
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6
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445
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Issue with DECIPHER::IdTaxa
DECIPHER IdTaxa
10 months ago sebastian.mynott • 0
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1
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133
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convert sequences disambiguated with DECIPHER back to FASTA
DECIPHER FASTA disambiguate
14 months ago joannew • 0
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2
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201
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how to design probes using decipher
R decipher
14 months ago hoonhuiyi • 0
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5
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773
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Error in (function (classes, fdef, mtable)
software error DECIPHER
updated 15 months ago by 2.8k • written 15 months ago by • 0
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21
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605
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How to use DECIPHER to design group-specific primers
Decipher
15 months ago hoonhuiyi • 0
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1
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146
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DECIPHER::AlignSeqs fails with a large guide tree
DECIPHER
updated 18 months ago by ▴ 150 • written 18 months ago by ▴ 10
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1
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167
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PCR simulation with PNAs
PCR DECIPHER PNA
22 months ago marissaruthlee • 0
1
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2
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Display BrowseSeqs output in R Notebook?
BrowseSeqs DECIPHER notebook rmarkdown
updated 23 months ago by ▴ 150 • written 23 months ago by • 0
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193
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Alignment larger than the maximum allowable size
DECIPHER
updated 2.1 years ago by 2.8k • written 2.1 years ago by • 0
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4
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512
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How to get sequence homology percent from a multiple sequence alignment in DECIPHER?
decipher r protein alignment
3.2 years ago reubenmcgregor88 • 0
2
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2
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738
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How to combine sequences from different stringsets?
biostrings decipher
updated 3.5 years ago by ★ 5.0k • written 3.5 years ago by • 0
1
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3
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533
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Transform index to chromosome in DECIPHER package
decipher
updated 3.5 years ago by ▴ 150 • written 3.5 years ago by ▴ 40
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7
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Is it possible to do an alignment to a chosen reference sequence in DECIPHER?
R decipher biostrings
updated 3.6 years ago by ▴ 150 • written 3.6 years ago by • 0
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2
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476
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Is it possible to import many .tsr sequence file into R using bio strings for use in DECIPHER?
r biostrings decipher
3.6 years ago reubenmcgregor88 • 0
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5
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673
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Colour a phylogenetic tree, based on column in DECIPHER?
r decipher biostrings
updated 3.6 years ago by ▴ 150 • written 3.6 years ago by • 0
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3
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751
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Is it possible to import a multiple fasta alignemnt (.mfa) file into DECIPHER?
decipher DNA biostrings
updated 3.6 years ago by ▴ 150 • written 3.6 years ago by • 0
0
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1
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591
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DECIPHER - AlignSeqs error is.leaf(dend) node stack overflow
decipher alignment
updated 3.8 years ago by ▴ 10 • written 3.8 years ago by • 0
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1
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860
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AlignSeqs error: protect(): protection stack overflow
multiplealignment decipher
3.8 years ago c.l.frankling • 0
2
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5
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905
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Multiple Sequence Alignment using DNA sequence
msa decipher
4.2 years ago bbista91 ▴ 10
1
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5
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774
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DECIPHER version bug using biocLite()
DECIPHER
5.1 years ago Vinicius Henrique da Silva ▴ 40
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1
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548
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Possible bug in ConsensusSequence
DECIPHER
updated 5.2 years ago by ▴ 10 • written 5.2 years ago by • 0
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3
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1.7k
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mt.teststat
multtest DECIPHER multtest DECIPHER
updated 5.5 years ago by ▴ 20 • written 18.3 years ago by ▴ 220
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1.0k
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Job: Bioinformatics Postdoc Position at the IMB, Mainz
Genetics DECIPHER Genetics DECIPHER
7.4 years ago Kathi Zarnack ▴ 110
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1
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640
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Agi4x44PreProcess: Replicated Genes and Custom Annotation Database
Annotation zebrafish probe DECIPHER Annotation zebrafish probe DECIPHER
updated 11.0 years ago by ★ 7.2k • written 11.0 years ago by ▴ 40
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1.2k
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boxplot error with expression set using oligo package and Human gene st 1.0 arrays
oligo DECIPHER oligo DECIPHER
updated 11.1 years ago by ★ 4.3k • written 11.1 years ago by ▴ 30
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687
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Basic Question about gcrma & exporting to excel > (command not working)
Microarray affy gcrma oligo arrayQualityMetrics DECIPHER Microarray affy gcrma oligo
11.1 years ago Dick Beyer ★ 1.4k
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859
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'Heat Map for Genes in Dataset' in the '(project name).global.plots.pdf' output of the R-GSEA code
Genetics Clustering DECIPHER Genetics Clustering DECIPHER
11.3 years ago Radek Blatny ▴ 60
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1.1k
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Post-doc position in Paris
Sequencing Epigenetics Cancer Breast DECIPHER Sequencing Epigenetics Cancer Breast
12.1 years ago Joern Toedling ▴ 450
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4
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714
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help with large Rgraphviz output
graph DECIPHER graph DECIPHER
updated 15.1 years ago by ★ 7.4k • written 15.1 years ago by ▴ 890
38 results • Page 1 of 1
Recent ...
Replies
Comment: DESeq2 question: why I got discrepancy results for DEGs when using different way by Michael Love 33k
What is the correlation of the LFC for your two contrasts of mut vs wt in auto ganglia? Does the scatterplot of log2 fold changes look like…
Comment: DESeq2 question: why I got discrepancy results for DEGs when using different way by Ming ▴ 350
Thx for the advice about the reference levels, in which I did do as you suggested! In fact, I even tried more options just want to see why…
Answer: Time series DE gene analysis with edgeR where specific timepoints have NA levels by Gordon Smyth 43k
> is there a way to incorporate also the information of the additional samples that lack any of the aforementioned levels? NA values are n…
Comment: Time series DE gene analysis with edgeR where specific timepoints have NA levels by James W. MacDonald 57k
The `voomLmFit` function will automatically fit a linear mixed model accounting for within-subject correlations if you block on patient, so…
Comment: error in getBM (biomaRt): "error: no such table: metadata" by Mike Smith ★ 5.0k
Thanks for providing this solution. Anyone else encountering the issue can test if the cache is a problem by running `getBM()` with the ar…
Votes
tximeta error in fetching genome info
Answer: error in getBM (biomaRt): "error: no such table: metadata"
C: DESeq2 design formula: single control for multiple conditions [RIP-seq]
DESeq2 testing ratio of ratios (RIP-Seq, CLIP-Seq, ribosomal profiling)
Answer: cannot install edgeR on M1 Mac
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