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Showing :
decipher
•
reset
0
votes
2
replies
833
views
convert sequences disambiguated with DECIPHER back to FASTA
DECIPHER
FASTA
disambiguate
written 3.8 years ago by
joannew
• 0
0
votes
3
replies
604
views
DECIPHER IdTaxa: Speed up training?
DECIPHER
idtaxa
updated 8 months ago by
Erik Wright
▴ 150 • written 8 months ago by
Till
▴ 30
3
votes
5
replies
1.5k
views
Error: 'IdClusters'
DECIPHER
updated 9 months ago by
Ling-Hsiu
▴ 10 • written 13 months ago by
julieta.micorriza
• 0
0
votes
0
replies
348
views
Updating 16S training set with LearnTaxa
DECIPHER
15 months ago
Connor
• 0
0
votes
3
replies
962
views
Problem with multiple sequence alignment using AlignSeqs
R
dada2
DECIPHER
updated 15 months ago by
Erik Wright
▴ 150 • written 15 months ago by
Nelli
• 0
0
votes
1
reply
628
views
OligoArrayAux fails to compile
DECIPHER
16 months ago
fabian.roger08
▴ 10
0
votes
3
replies
1.1k
views
Issue::DesignPrimers DECIPHER
DECIPHER
DesignPrimers
updated 2.5 years ago by
slwmartin
• 0 • written 2.5 years ago by
Mailys
• 0
0
votes
1
reply
738
views
ORF finding in DECIPHER
ORF
DECIPHER
ORFhunteR
updated 2.8 years ago by
Erik Wright
▴ 150 • written 2.8 years ago by
tkirkland
• 0
0
votes
5
replies
2.1k
views
Do DECIPHER:IdTaxa / dada2::assignTaxonomy work with ambigious reference training set?
decipher
dada2
updated 2.8 years ago by
fabian.roger08
▴ 10 • written 4.1 years ago by
fabian.roger
• 0
0
votes
5
replies
1.4k
views
DECIPHER maximum allowable size
DECIPHER
Alignment
alig
updated 2.8 years ago by
Erik Wright
▴ 150 • written 2.8 years ago by
curiousmind007
▴ 10
0
votes
0
replies
924
views
DECIPHER Package on dada2 -Implementing Silva_metaxa2 training set from qza file into a fastq.gz/.Rdata
DECIPHER
dada2
3.0 years ago
anrongloh
• 0
0
votes
1
reply
795
views
Defining groups in Decipher by sequence position in the database (FASTA)
DefiningGroups
RStudio
DECIPHER
Specificprimers
updated 3.1 years ago by
Erik Wright
▴ 150 • written 3.1 years ago by
noeliaruizalonso23
• 0
0
votes
5
replies
1.7k
views
Program not properly installed/program not accessible by system
R
decipher
updated 3.0 years ago by
Erik Wright
▴ 150 • written 3.9 years ago by
hoonhuiyi
• 0
0
votes
0
replies
726
views
DECIPHER Probe Design Questions
DECIPHER
3.3 years ago
henry1995910343
• 0
0
votes
2
replies
736
views
insufficient alignment
DECIPHER
Alignment
3.4 years ago
julius_vn
• 0
0
votes
3
replies
1.6k
views
DECIPHER save alignement in outputs
msa
decipher
output
prettyPrint
updated 3.5 years ago by
UBodenhofer
▴ 290 • written 3.5 years ago by
matamunee
• 0
1
vote
6
replies
1.7k
views
Issue with DECIPHER::IdTaxa
DECIPHER
IdTaxa
3.5 years ago
sebastian.mynott
• 0
0
votes
2
replies
829
views
how to design probes using decipher
R
decipher
3.9 years ago
hoonhuiyi
• 0
0
votes
5
replies
3.7k
views
Error in (function (classes, fdef, mtable)
software error
DECIPHER
updated 3.9 years ago by
shepherl
3.8k • written 3.9 years ago by
hoonhuiyi
• 0
0
votes
21
replies
2.7k
views
How to use DECIPHER to design group-specific primers
Decipher
3.9 years ago
hoonhuiyi
• 0
0
votes
1
reply
855
views
DECIPHER::AlignSeqs fails with a large guide tree
DECIPHER
updated 4.2 years ago by
Erik Wright
▴ 150 • written 4.2 years ago by
brendan.furneaux
▴ 10
0
votes
1
reply
674
views
PCR simulation with PNAs
PCR
DECIPHER
PNA
4.5 years ago
marissaruthlee
• 0
1
vote
2
replies
1.3k
views
Display BrowseSeqs output in R Notebook?
BrowseSeqs
DECIPHER
notebook
rmarkdown
updated 4.5 years ago by
Erik Wright
▴ 150 • written 4.5 years ago by
lauren.fitch
• 0
0
votes
0
replies
611
views
Alignment larger than the maximum allowable size
DECIPHER
updated 4.7 years ago by
shepherl
3.8k • written 4.7 years ago by
cmasembe
• 0
2
votes
4
replies
1.6k
views
How to get sequence homology percent from a multiple sequence alignment in DECIPHER?
decipher
r
protein alignment
5.9 years ago
reubenmcgregor88
• 0
2
votes
2
replies
1.8k
views
How to combine sequences from different stringsets?
biostrings
decipher
updated 6.1 years ago by
Mike Smith
★ 6.4k • written 6.1 years ago by
reubenmcgregor88
• 0
1
vote
3
replies
1.2k
views
Transform index to chromosome in DECIPHER package
decipher
updated 6.2 years ago by
Erik Wright
▴ 150 • written 6.2 years ago by
Vinicius Henrique da Silva
▴ 40
5
votes
7
replies
1.6k
views
Is it possible to do an alignment to a chosen reference sequence in DECIPHER?
R
decipher
biostrings
updated 6.2 years ago by
Erik Wright
▴ 150 • written 6.2 years ago by
reubenmcgregor88
• 0
0
votes
2
replies
1.0k
views
Is it possible to import many .tsr sequence file into R using bio strings for use in DECIPHER?
r
biostrings
decipher
6.2 years ago
reubenmcgregor88
• 0
2
votes
5
replies
1.5k
views
Colour a phylogenetic tree, based on column in DECIPHER?
r
decipher
biostrings
updated 6.2 years ago by
Erik Wright
▴ 150 • written 6.2 years ago by
reubenmcgregor88
• 0
2
votes
3
replies
1.7k
views
Is it possible to import a multiple fasta alignemnt (.mfa) file into DECIPHER?
decipher
DNA
biostrings
updated 6.2 years ago by
Erik Wright
▴ 150 • written 6.2 years ago by
reubenmcgregor88
• 0
0
votes
1
reply
1.2k
views
DECIPHER - AlignSeqs error is.leaf(dend) node stack overflow
decipher
alignment
updated 6.4 years ago by
Erik Wright
▴ 10 • written 6.4 years ago by
emma.berdan
• 0
0
votes
1
reply
1.6k
views
AlignSeqs error: protect(): protection stack overflow
multiplealignment
decipher
6.5 years ago
c.l.frankling
• 0
2
votes
5
replies
1.8k
views
Multiple Sequence Alignment using DNA sequence
msa
decipher
6.8 years ago
bbista91
▴ 10
1
vote
5
replies
1.5k
views
DECIPHER version bug using biocLite()
DECIPHER
7.8 years ago
Vinicius Henrique da Silva
▴ 40
0
votes
1
reply
938
views
Possible bug in ConsensusSequence
DECIPHER
updated 7.9 years ago by
Erik Wright
▴ 10 • written 7.9 years ago by
rob.lanfear
• 0
0
votes
3
replies
2.6k
views
mt.teststat
multtest
DECIPHER
multtest
DECIPHER
updated 8.2 years ago by
Smeeta Shrestha
▴ 20 • written 21.0 years ago by
Park, Richard
▴ 220
0
votes
0
replies
1.5k
views
Job: Bioinformatics Postdoc Position at the IMB, Mainz
Genetics
DECIPHER
Genetics
DECIPHER
10.0 years ago
Kathi Zarnack
▴ 110
0
votes
1
reply
1.1k
views
Agi4x44PreProcess: Replicated Genes and Custom Annotation Database
Annotation
zebrafish
probe
DECIPHER
Annotation
zebrafish
probe
DECIPHER
updated 13.6 years ago by
Marc Carlson
★ 7.2k • written 13.6 years ago by
Samantha England
▴ 40
0
votes
1
reply
1.8k
views
boxplot error with expression set using oligo package and Human gene st 1.0 arrays
oligo
DECIPHER
oligo
DECIPHER
updated 13.8 years ago by
Benilton Carvalho
★ 4.3k • written 13.8 years ago by
jos matejus
▴ 40
0
votes
0
replies
1.2k
views
Basic Question about gcrma & exporting to excel > (command not working)
Microarray
affy
gcrma
oligo
arrayQualityMetrics
DECIPHER
Microarray
affy
gcrma
oligo
13.8 years ago
Dick Beyer
★ 1.4k
0
votes
0
replies
1.4k
views
'Heat Map for Genes in Dataset' in the '(project name).global.plots.pdf' output of the R-GSEA code
Genetics
Clustering
DECIPHER
Genetics
Clustering
DECIPHER
14.0 years ago
Radek Blatny
▴ 60
0
votes
0
replies
1.6k
views
Post-doc position in Paris
Sequencing
Epigenetics
Cancer
Breast
DECIPHER
Sequencing
Epigenetics
Cancer
Breast
14.7 years ago
Joern Toedling
▴ 450
0
votes
4
replies
1.3k
views
help with large Rgraphviz output
graph
DECIPHER
graph
DECIPHER
updated 17.8 years ago by
Seth Falcon
★ 7.4k • written 17.8 years ago by
Kimpel, Mark W
▴ 890
44 results • Page
1 of 1
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Replies
Comment: DEG Filtering
by
Gordon Smyth
50k
RMA normalization is good but batch correction using NOISeq isn't right. Data shouldn't be batch corrected before the limma analysis and NO…
Answer: maftools: Error in validateMaf(maf = maf, isTCGA = isTCGA, rdup = removeDuplicat
by
snijesh
▴ 20
You can try: using `read.delim` or `fread`. ``` my_maf = data.table::fread("path/to/maf/sample.maf") my_maf = read.maf(maf = my_maf) …
Comment: DEG Filtering
by
Amit
• 0
Hi Gordon, Thank you for your response and advice. I want to analyze Dataset GSE18090 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi) whic…
Comment: edgeR, 3 x 2 design with a batch effect and contrasts
by
Gordon Smyth
50k
Yes, that is a quote from [A guide to creating design matrices for gene expression experiments](https://bioconductor.org/packages/release/w…
Comment: edgeR, 3 x 2 design with a batch effect and contrasts
by
JKim
• 0
Thank you. I think I found why the order matters. > Although an intercept-free design matrix has been coded using the 0+ notation, the in…
Votes
C: How to check that the reads in two fastq files are in the same order
Answer: edgeR, 3 x 2 design with a batch effect and contrasts
Answer: Need help with creating and plotting temporal clustering analysis of DEGs
Answer: Problem converting msigdb Human symbols to Zebrafish in gmt format
Answer: Problem converting msigdb Human symbols to Zebrafish in gmt format
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