Showing : decipher • reset
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DECIPHER Package on dada2 -Implementing Silva_metaxa2 training set from qza file into a fastq.gz/.Rdata
DECIPHER dada2
5 weeks ago anrongloh • 0
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1
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Defining groups in Decipher by sequence position in the database (FASTA)
DefiningGroups RStudio DECIPHER Specificprimers
updated 11 weeks ago by ▴ 150 • written 11 weeks ago by • 0
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5
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284
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Program not properly installed/program not accessible by system
R decipher
updated 7 weeks ago by ▴ 150 • written 12 months ago by • 0
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DECIPHER Probe Design Questions
DECIPHER
5 months ago henry1995910343 • 0
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2
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102
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insufficient alignment
DECIPHER Alignment
6 months ago julius_vn • 0
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3
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159
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DECIPHER save alignement in outputs
msa decipher output prettyPrint
updated 8 months ago by ▴ 250 • written 8 months ago by • 0
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6
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332
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Issue with DECIPHER::IdTaxa
DECIPHER IdTaxa
8 months ago sebastian.mynott • 0
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95
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convert sequences disambiguated with DECIPHER back to FASTA
DECIPHER FASTA disambiguate
11 months ago joannew • 0
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2
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149
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how to design probes using decipher
R decipher
12 months ago hoonhuiyi • 0
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5
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640
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Error in (function (classes, fdef, mtable)
software error DECIPHER
updated 13 months ago by 2.6k • written 13 months ago by • 0
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467
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How to use DECIPHER to design group-specific primers
Decipher
13 months ago hoonhuiyi • 0
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4
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242
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Do DECIPHER:IdTaxa / dada2::assignTaxonomy work with ambigious reference training set?
decipher dada2
updated 15 months ago by ▴ 150 • written 15 months ago by • 0
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1
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96
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DECIPHER::AlignSeqs fails with a large guide tree
DECIPHER
updated 16 months ago by ▴ 150 • written 16 months ago by ▴ 10
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1
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125
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PCR simulation with PNAs
PCR DECIPHER PNA
19 months ago marissaruthlee • 0
1
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2
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240
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Display BrowseSeqs output in R Notebook?
BrowseSeqs DECIPHER notebook rmarkdown
updated 20 months ago by ▴ 150 • written 20 months ago by • 0
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160
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Alignment larger than the maximum allowable size
DECIPHER
updated 22 months ago by 2.6k • written 22 months ago by • 0
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4
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424
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How to get sequence homology percent from a multiple sequence alignment in DECIPHER?
decipher r protein alignment
3.0 years ago reubenmcgregor88 • 0
2
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2
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674
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How to combine sequences from different stringsets?
biostrings decipher
updated 3.3 years ago by ★ 4.9k • written 3.3 years ago by • 0
1
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3
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480
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Transform index to chromosome in DECIPHER package
decipher
updated 3.3 years ago by ▴ 150 • written 3.3 years ago by ▴ 40
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7
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583
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Is it possible to do an alignment to a chosen reference sequence in DECIPHER?
R decipher biostrings
updated 3.3 years ago by ▴ 150 • written 3.3 years ago by • 0
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2
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441
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Is it possible to import many .tsr sequence file into R using bio strings for use in DECIPHER?
r biostrings decipher
3.3 years ago reubenmcgregor88 • 0
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5
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607
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Colour a phylogenetic tree, based on column in DECIPHER?
r decipher biostrings
updated 3.4 years ago by ▴ 150 • written 3.4 years ago by • 0
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3
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686
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Is it possible to import a multiple fasta alignemnt (.mfa) file into DECIPHER?
decipher DNA biostrings
updated 3.4 years ago by ▴ 150 • written 3.4 years ago by • 0
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1
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545
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DECIPHER - AlignSeqs error is.leaf(dend) node stack overflow
decipher alignment
updated 3.6 years ago by ▴ 10 • written 3.6 years ago by • 0
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1
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823
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AlignSeqs error: protect(): protection stack overflow
multiplealignment decipher
3.6 years ago c.l.frankling • 0
2
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5
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854
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Multiple Sequence Alignment using DNA sequence
msa decipher
4.0 years ago bbista91 ▴ 10
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5
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726
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DECIPHER version bug using biocLite()
DECIPHER
4.9 years ago Vinicius Henrique da Silva ▴ 40
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1
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515
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Possible bug in ConsensusSequence
DECIPHER
updated 5.0 years ago by ▴ 10 • written 5.0 years ago by • 0
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3
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1.6k
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mt.teststat
multtest DECIPHER multtest DECIPHER
updated 5.3 years ago by ▴ 20 • written 18.1 years ago by ▴ 220
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1000
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Job: Bioinformatics Postdoc Position at the IMB, Mainz
Genetics DECIPHER Genetics DECIPHER
7.2 years ago Kathi Zarnack ▴ 110
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1
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610
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Agi4x44PreProcess: Replicated Genes and Custom Annotation Database
Annotation zebrafish probe DECIPHER Annotation zebrafish probe DECIPHER
updated 10.8 years ago by ★ 7.2k • written 10.8 years ago by ▴ 40
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1.2k
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boxplot error with expression set using oligo package and Human gene st 1.0 arrays
oligo DECIPHER oligo DECIPHER
updated 10.9 years ago by ★ 4.3k • written 10.9 years ago by ▴ 30
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Basic Question about gcrma & exporting to excel > (command not working)
Microarray affy gcrma oligo arrayQualityMetrics DECIPHER Microarray affy gcrma oligo
10.9 years ago Dick Beyer ★ 1.4k
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'Heat Map for Genes in Dataset' in the '(project name).global.plots.pdf' output of the R-GSEA code
Genetics Clustering DECIPHER Genetics Clustering DECIPHER
11.1 years ago Radek Blatny ▴ 60
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1.1k
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Post-doc position in Paris
Sequencing Epigenetics Cancer Breast DECIPHER Sequencing Epigenetics Cancer Breast
11.9 years ago Joern Toedling ▴ 450
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4
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668
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help with large Rgraphviz output
graph DECIPHER graph DECIPHER
updated 14.9 years ago by ★ 7.4k • written 14.9 years ago by ▴ 890
36 results • Page 1 of 1
Recent ...
Replies
Answer: DiffBind by Rory Stark ★ 3.8k
I'll answer the second question first. You should not accessing the `$binding` matrix directly -- the chromosome names are factor numbers,…
Comment: How to download the ChAMP dependency ChAMPdata by shepherl 2.6k
You could try increasing the timeout limit for downloading files. I increased mine in a `.Rprofile` script so its persistent in all sessio…
Comment: DiffBind reporting error by Rory Stark ★ 3.8k
If you could give me access to your `dbind_de` object, I can have a look at what is going on. it would help to see the sequence of calls yo…
Comment: limma - removing samples? by RMP87 • 0
Thank you very much for the explanation. Making it more precise. Could I analyze and normalize all samples from a dataset even though I had…
Comment: DESeq2, why are the signs of EDASeq offsets flipped compared to CQN ? by Saulius • 0
Yes - I think you are right once more. Thanks for taking so much time to look into this. Size factors come in twice in the code of `cqn`: …
Votes
What does dba.PCA in DiffBind exactly do?
Answer: How to retrieve peak summit from DiffBind peaks
Comment: How to download the ChAMP dependency ChAMPdata
Effect of feature number on adjusted p-values
Effect of feature number on adjusted p-values
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