I have the list of gene IDs which are ensembl Ids I wanted do GO analysis for this list of genes. How can I do this from the GOseq I went through vignette which is running the GOseq from the DE genes output, my genes list are not from the DE this are obtained according to my objective.
can anyone suggest me?
Gene IDs list is looking as
code What I have run data containes the above listed gene name
gene=read.table("data", header=T) gene<- gene$gene_name pwf=nullp(gene,"mm10","ensGene")
Error what I got
Can't find mm10/ensGene length data in genLenDataBase... A TxDb annotation package exists for mm10. Consider installing it to get the gene lengths. Trying to download from UCSC. This might take a couple of minutes. Error in value[[3L]](cond) : Length information for genome mm10 and gene ID ensGene is not available. You will have to specify bias.data manually. In addition: Warning messages: 1: In library() : libraries ‘/usr/local/lib/R/site-library’, ‘/usr/lib/R/site-library’ contain no packages 2: In grep(txdbPattern, installedPackages) : argument 'pattern' has length > 1 and only the first element will be used