Couldn't load org.Hs.eg.db
library(org.Hs.eg.db) Error: package or namespace load failed for ‘org.Hs.eg.db’: onLoad failed in loadNamespace() for 'org.Hs.eg.db', details: Call: l$contains Error: $ operator is invalid for atomic vectors
Couldn't load org.Hs.eg.db
library(org.Hs.eg.db) Error: package or namespace load failed for ‘org.Hs.eg.db’: onLoad failed in loadNamespace() for 'org.Hs.eg.db', details: Call: l$contains Error: $ operator is invalid for atomic vectors
If this is happening in RStudio, it is likely an issue with the current version of RSQLite
. See
for more details. Installing an older version of RSQLite
(e.g. v2.2.5) should solve the problem for now.
I get this error when I try to install a previous version with R:
Error in download_version_url(package, version, repos, type) : version '2.2.5' is invalid for package 'RSQLite'
When I try to manually install 2.2.5 via R studio by first downloading the .tar file, it tells me that my R studio is not supporting the older version.
Any idea how I can fix this?
I would like to run ChIPseeker and I need the org.Hs.eg.db library..
EDIT: installing RSQLite version 2.2.4 worked for me and library is running again
Hi, I've tried all of these things and am still having this problem.
library(org.Hs.eg.db) Error: package or namespace load failed for ‘org.Hs.eg.db’: .onLoad failed in loadNamespace() for 'org.Hs.eg.db', details: call: l$contains error: $ operator is invalid for atomic vectors
library(pathview) Error: package or namespace load failed for ‘pathview’: .onLoad failed in loadNamespace() for 'org.Hs.eg.db', details: call: l$contains error: $ operator is invalid for atomic vectors
Any suggestions? I am trying to run a KEGG pathway analysis
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As you can see here (.onLoad failed in loadNamespace() for 'org.Hs.eg.db'), it is a recurrent problem since Monday...
I'm having the same issue. Pathview, org.Mm.eg.db, and org.Hs.eg.db won't load anymore.