Rsamtools: how to output base positions on reads

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yuharasatoshi • 0

@9c113504

Last seen 3.4 years ago

Japan

When running samtools mpileup, the "-O --output-BP" option is used to get the base positions on the aligned reads. Is it possible to do the same in Rsamtools?

Rsamtools • 910 views

ADD COMMENT • link updated 3.4 years ago by Martin Morgan 25k • written 3.4 years ago by yuharasatoshi • 0

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Can you add to your question to provide a more complete example of the output that you are after? Have you explored the pileup() command?

ADD REPLY • link 3.4 years ago Martin Morgan 25k

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