package ‘destiny’ is not available for Bioconductor version '3.13'
1
1
Entering edit mode
Yiming ▴ 10
@0ecd860e
Last seen 4 months ago
United States

Hello, I am trying to install package destiny on R_4.1.0 via Bioamanager 3.13, however, It warned me that no package destiny available.


> BiocManager::install('destiny')
'getOption("repos")' replaces Bioconductor standard repositories, see '?repositories' for details

replacement repositories:
    CRAN: https://cran.rstudio.com/

Bioconductor version 3.13 (BiocManager 1.30.16), R 4.1.0 (2021-05-18)
Installing package(s) 'destiny'
Warning message:
In .inet_warning(msg) :
  package ‘destiny’ is not available for Bioconductor version '3.13'

A version of this package for your version of R might be available elsewhere,
see the ideas at
https://cran.r-project.org/doc/manuals/r-patched/R-admin.html#Installing-packages

I checked the page for destiny, and it seems that BiocManager 3.13 supports the package. However, using function BiocManager::available, the package is out of reach.

> BiocManager::available('destiny')
'getOption("repos")' replaces Bioconductor standard repositories, see '?repositories' for details

replacement repositories:
    CRAN: https://cran.rstudio.com/

character(0)

Here is my session info:

> sessionInfo()
R version 4.1.0 (2021-05-18)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: Ubuntu 20.04.2 LTS

Matrix products: default
BLAS:   /data/public/R_4.1.0/lib/R/lib/libRblas.so
LAPACK: /data/public/R_4.1.0/lib/R/lib/libRlapack.so

locale:
 [1] LC_CTYPE=C.UTF-8       LC_NUMERIC=C           LC_TIME=C.UTF-8        LC_COLLATE=C.UTF-8     LC_MONETARY=C.UTF-8   
 [6] LC_MESSAGES=C.UTF-8    LC_PAPER=C.UTF-8       LC_NAME=C              LC_ADDRESS=C           LC_TELEPHONE=C        
[11] LC_MEASUREMENT=C.UTF-8 LC_IDENTIFICATION=C   

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base     

other attached packages:
[1] BiocManager_1.30.16

loaded via a namespace (and not attached):
[1] compiler_4.1.0 tools_4.1.0

Thakn you for you help!

destiny BiocVersion • 1.4k views
ADD COMMENT
0
Entering edit mode
shepherl 2.9k
@lshep
Last seen 2 days ago
United States

Destiny has yet to build properly since the Bioconductor 3.13 release and therefore is not yet available.

http://bioconductor.org/checkResults/release/bioc-LATEST/destiny/

I suggest you reach out to the Destiny maintainers as we have tried and they have yet to fix the package to make it available.

Alternative solutions in the meantime would be to download the source code available

git clone https://git.bioconductor.org/packages/destiny

And trying to install manually. note that if it is failing on our build system there may be issues that may prevent certain functionality of the package from functioning properly

ADD COMMENT

Login before adding your answer.

Traffic: 376 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6