DiffBind in Bioconda
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Riba Michela ▴ 90
@riba-michela-6472
Last seen 6 weeks ago
Italy

Hi,

I was going to check my scripts for differential ATAC-seq Binding Analysis and wanted to install an updated version of "DiffBind" Bioconductor package, in particular version 3.2.6 or 3.2.4 in whcih a specific little bug that was present in version 3.015 was solved (as you can see in one previous answer by Rory Stark). I intstalled the 3.2.6 verison on my macbook, and proceded with analyses fine, however I am now experiencing someting not convincing in the linux side: I would like to scale up some analyses and I would need parallel computing, as common in bioinformatics. My problem is: I would like to update the package in a conda environment, however when I go on anaconda site I cannotnot find those updated versions (3.2.4 or 3.2.6)

https://anaconda.org/bioconda/bioconductor-diffbind/files

is there a way to use updated versions from anaconda? or maybe I am wrong

thanks a lot

Michela

DiffBind Bioconda Versions • 150 views
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merv ▴ 30
@mmfansler-13248
Last seen 2 days ago
MSKCC | New York, NY

The latest version (3.2.7) is now available on the Bioconda channel. This was done via this Pull Request.

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Thanks a lot!

Michela

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