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Code should be placed in three backticks as shown below
> myNorm <- champ.norm(beta=myLoad$beta,
arraytype="EPIC",
method="BMIQ",
cores=20,
plotBMIQ=TRUE,
resultsDir="/home/user/XX/methylation/2.preprocess_result/normalization")
[>>>>> ChAMP.NORM START <<<<<<]
-----------------------------
champ.norm Results will be saved in /home/user/guoyu/methylation/2.preprocess_result/normalization
[ SWAN method call for BOTH rgSet and mset input, FunctionalNormalization call for rgset only , while PBC and BMIQ only needs beta value. Please set parameter correctly. ]
<< Normalizing data with BMIQ Method >>
Note that,BMIQ function may fail for bad quality samples (Samples did not even show beta distribution).
20 cores will be used to do parallel BMIQ computing.
Error in serialize(data, node$con) : error writing to connection
Cross-posted: https://www.biostars.org/p/9492051/#9492051