error in champ.norm
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Entering edit mode
yu • 0
@b6f469db
Last seen 3.1 years ago
China

Enter the body of text here

Code should be placed in three backticks as shown below

> myNorm <- champ.norm(beta=myLoad$beta,
                     arraytype="EPIC",
                     method="BMIQ",
                     cores=20,
                     plotBMIQ=TRUE,
                     resultsDir="/home/user/XX/methylation/2.preprocess_result/normalization")
[>>>>> ChAMP.NORM START <<<<<<]
-----------------------------
champ.norm Results will be saved in /home/user/guoyu/methylation/2.preprocess_result/normalization
[ SWAN method call for BOTH rgSet and mset input, FunctionalNormalization call for rgset only , while PBC and BMIQ only needs beta value. Please set parameter correctly. ]

<< Normalizing data with BMIQ Method >>
Note that,BMIQ function may fail for bad quality samples (Samples did not even show beta distribution).
20 cores will be used to do parallel BMIQ computing.

Error in serialize(data, node$con) : error writing to connection
champ.norm ChAMP • 1.3k views
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