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Dear all,
would you please let me know what is the best/simplest package in BioC that computes the closest gene to a particular ChIP-seq peak ?
Thank you,
Bogdan
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Have you tried ChIPpeakAnno: https://www.bioconductor.org/packages/devel/bioc/vignettes/ChIPpeakAnno/inst/doc/ChIPpeakAnno.html#Find_the_nearest_feature_and_the_distance_to_the_feature_for_the_peaklists