Showing : Annotation • reset
1
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0
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37
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News: Bioconductor 3.13 db0s, OrgDbs and TxDbs now available
annotation release db0
2 days ago kayla.interdonato 120
5
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2
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59
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how can I annotate my scRNAseq clusters from a Rat experiment?
scRNAseq Rattus_norvegicus_Data annotation
updated 1 day ago by ▴ 630 • written 3 days ago by • 0
0
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9
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206
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The GO annotation of fugal species outside of 20 model organisms is outdated
GO biomartr annotation ensemble fungi
updated 2 days ago by 56k • written 10 days ago by • 0
2
votes
1
reply
111
views
Geno Ontology Analysis using gene symbol
GO.db Annotation Clusterprofile GeneOntology
updated 8 weeks ago by ▴ 80 • written 9 weeks ago by • 0
0
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2
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85
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Annotation for Macaca fascicularis
Macaca_fascicularis annotation
updated 11 weeks ago by 56k • written 11 weeks ago by • 0
11
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17
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11k
views
DESeq2: add annotations (from data frame) to DESeqDataSet
deseq2 annotation granges
written 6.5 years ago by ▴ 120
0
votes
2
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154
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mapping gene type or biotype to ENSEMBL ID
ensembldb biomaRt org.Hs.eg.db Annotation
updated 4 months ago by ★ 1.9k • written 4 months ago by • 0
5
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8
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1.1k
views
how to annotate arrays
affy annotation microarray oligo
updated 5 months ago by 56k • written 5.8 years ago by • 0
2
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6
replies
261
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How to generate custom annotation for rat genome rn6 in ChIPQC
ChIPQC annotation rn6
7 months ago • updated 5 months ago Frédéric Crémazy • 0
7
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10
replies
3.5k
views
annotating gene for transcript type/biotype
annotation homo.sapiens
updated 5 months ago by 56k • written 5.5 years ago by ▴ 30
0
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2
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329
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ChIP seeker annotation error
DiffBind chipseq ChIPseeker ChipDb annotation
5 months ago • updated 3 months ago Mar Mar • 0
0
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2
replies
131
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Can we align all the names of the transcripts (GeneRegionTrack) in the plotTracks() output?
Annotation Alignment Gviz
6 months ago Vaibhav • 0
0
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4
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647
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Cannot properly finish biomaRt query
software error annotation biomart
updated 6 months ago by • 0 • written 11 months ago by ▴ 10
0
votes
1
reply
115
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help documentation for keytypes in annotationdbi packages
annotation
updated 6 months ago by 120 • written 6 months ago by • 0
1
vote
2
replies
274
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News: Final List of Deprecated Packages for Bioc3.12
annotation software experimentdata deprecated News
7 months ago • updated 6 months ago shepherl 2.6k
0
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1
reply
101
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RNAseq analysis of organism not included in BSgenome using QuasR
annotation
updated 6 months ago by 56k • written 6 months ago by • 0
4
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3
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204
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key lookup changes with AnnotationDbi version (bug?)
annotation
updated 6 months ago by 56k • written 6 months ago by ▴ 10
0
votes
1
reply
160
views
News: Bioconductor 3.12 db0s, OrgDbs and TxDbs now available
annotation db0 news release News
6 months ago kayla.interdonato 120
0
votes
3
replies
215
views
biomart archive version
annotation biomart
6 months ago raakesh_7111 • 0
4
votes
3
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214
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How to resolve NAs when annotating a diff gene list with org.Hs.eg.db terms?
annotation rna
updated 6 months ago by 56k • written 6 months ago by ▴ 20
1
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3
replies
259
views
Annotating [HuGene-1_0-st] Affymetrix Human Gene 1.0 ST Array [transcript (gene) version] file
microarray annotation affy
7 months ago kiera.lee ▴ 10
0
votes
3
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137
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Help! How to convert S-Fe10_GL0038907 to a protein name
annotation
updated 7 months ago by 56k • written 7 months ago by • 0
3
votes
0
replies
534
views
News: List of Deprecated Packages for Bioc3.12
annotation software experiment data deprecated News
8 months ago • updated 7 months ago shepherl 2.6k
0
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3
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184
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Pathway analysis of bacterial RNA-seq data
annotation rna-seq pathway analysis
7 months ago microPhD • 0
2
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2
replies
191
views
R: Find all genes associated with a genomic range
annotation
updated 7 months ago by 2.9k • written 7 months ago by ▴ 10
3
votes
1
reply
138
views
How to use Mus.musculus in a package function without polluting namespace?
annotation
updated 7 months ago by 25k • written 7 months ago by ▴ 40
1
vote
5
replies
186
views
TCGA: clinical data and expression data
microarray annotation cancer
updated 7 months ago by 2.9k • written 7 months ago by • 0
1
vote
4
replies
337
views
biromartr query fail
annotation
updated 8 months ago by ★ 4.9k • written 8 months ago by ▴ 10
4
votes
17
replies
450
views
annotation conversion from old microarray to latest Entrez and Ensembl ID
biomaRt annotation Ensembl annotationHub
updated 8 months ago by 2.9k • written 8 months ago by ▴ 10
4
votes
2
replies
186
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News: ensembldb EnsDb databases for Ensembl release 101 added to AnnotationHub
EnsDb ensembldb annotation AnnotationHub News
8 months ago Johannes Rainer ★ 1.9k
0
votes
2
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128
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What is Software, Annotationdata, Experimentdata and workflow category?
Software annotation experiment workflow
updated 8 months ago by 2.6k • written 9 months ago by • 0
2
votes
4
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319
views
Error in .local(x, i, j = j, ...) : 'i' must be length 1 in using OrganismDbi to create org.XX.eg.db
annotation
updated 9 months ago by 56k • written 9 months ago by • 0
5
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11
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339
views
"associated_gene" attribute from biomaRt returns too few values - SNP(rsID dataset)
r biomart SNP annotation HUGO
updated 9 months ago by ★ 4.9k • written 9 months ago by • 0
2
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3
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190
views
Annotation of Genomic Regions
annotation genomic regions R
updated 9 months ago by 56k • written 9 months ago by • 0
0
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4
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147
views
Genomic Annotation Package Ensembl
Chromosome Annotation
updated 9 months ago by 56k • written 9 months ago by ▴ 10
0
votes
0
replies
87
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ChIPpeakanno annotation results interpretation
annotation
9 months ago gisapassaia • 0
1
vote
2
replies
123
views
RNA Seq from MusMusculus and HomoSapiens
tximeta tximport annotation
updated 10 months ago by 32k • written 10 months ago by • 0
2
votes
1
reply
130
views
AnnotationHub errors when querying
annotation
updated 10 months ago by ★ 2.9k • written 10 months ago by ▴ 10
1
vote
3
replies
123
views
Mixed-up column names for getBM()?
annotation
updated 10 months ago by 56k • written 10 months ago by • 0
2
votes
3
replies
196
views
EnsDb.Rnorvegicus for Rnor6
annotation db reference rnor6
updated 10 months ago by ★ 2.9k • written 10 months ago by • 0
3
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6
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164
views
Extremely big genes in annotation TxDb packages
annotation txdb AnnotationData Genetics
updated 10 months ago by 56k • written 10 months ago by ▴ 10
0
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4
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196
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Wrong annotation (TSS/TTS) for many genes: keytype="GENEID" with mapIds(TxDb.Mmusculus.UCSC.mm10.knownGene)
AnnotationDbi annotation TxDb.Mmusculus.UCSC.mm10.knownGene
updated 10 months ago by 56k • written 10 months ago by • 0
1
vote
3
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103
views
Use Tx2Gene for Annotation
deseq2 annotation r
updated 10 months ago by 32k • written 10 months ago by • 0
1
vote
6
replies
771
views
Change fontsize/remove name of annotation ComplexHeatmap package
r rnaseq complexHeatmap annotation
updated 10 months ago by ▴ 210 • written 10 months ago by ▴ 10
0
votes
0
replies
58
views
The error when using "coMET" package
software error annotation
10 months ago yueli.yao • 0
2
votes
2
replies
109
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Goseq analysis related help.
annotation goseq
updated 11 months ago by 13k • written 11 months ago by • 0
0
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2
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89
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Differential analysis of protein spectral counts using msnSet object
annotation edger
updated 11 months ago by 2.9k • written 11 months ago by • 0
1
vote
2
replies
94
views
Annotation best practices
annotation
updated 11 months ago by 56k • written 11 months ago by ▴ 10
0
votes
0
replies
101
views
News: List of Deprecated Packages for Bioc3.12
deprecated experiment data software annotation News
11 months ago shepherl 2.6k
0
votes
3
replies
142
views
extracting the genes associated with a specific pathway
pathway KEGG annotation annotationhub
updated 11 months ago by 56k • written 11 months ago by ▴ 610
1,925 results • Page 1 of 39
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Comment: DEseq2 nested multi factor no replicates by melissa.mageroy • 0
Thanks for the suggestion!
Comment: Need help in running GO analysis by Rishav ▴ 10
Yes, I already solved that problem. I understand what was the problem . Thank you so much for your time
Answer: DESeq2 ashr with and without reflevels generate different log2FoldChanges by Michael Love 32k
*"How is it possible to get different log2FC using lfcShrink (ashr) by defining relevels compared to no relevels defining?"* This has be…
Comment: After having the output from SingleR for cell type annotation, what's the next s by sofiagreen72211 ▴ 10
I believe, you have a seurat object with 3 groups with barcodes. If this is the case, it's straight forward, get singleR predictions on eac…
Comment: Cannot install packages by BiocManager::install() by FairerBadge66 • 0
Thank you very much, it works, I was loosing my mind already.
Votes
Answer: Need help in running GO analysis
Answer: how can I annotate my scRNAseq clusters from a Rat experiment?
Answer: how can I annotate my scRNAseq clusters from a Rat experiment?
Comment: Cannot install packages by BiocManager::install()
Comment: Unable to install packages on MacOS
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