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Showing :
Annotation
•
reset
2
votes
2
replies
53
views
Is ther an annotation package for sheep (Ovis aries)
sheep
database_package
Annotation
1 day ago • updated 4 hours ago
priscilaramosibeas
▴ 10
0
votes
1
reply
53
views
Bioconductor tool for curating annotations?
Annotation
updated 3 days ago by
Lluís Revilla Sancho
▴ 700 • written 4 days ago by
Charles Plessy
▴ 170
3
votes
2
replies
80
views
I cannot install annotables package in Rstudio (macOS)
DESeq2
PackageTypeData
package
Annotation
8 days ago • updated 4 days ago
m-bihie
▴ 10
1
vote
9
replies
222
views
Is it possible to annotate a GRanges Object that has scaffolding names and not chromosome numbers?
Annotation
updated 11 days ago by
James W. MacDonald
62k • written 16 days ago by
stacy.genovese
• 0
5
votes
13
replies
2.9k
views
How to annotate gene names for genomic coordinates?
annotation
written 7.6 years ago by
seeker
• 0
0
votes
3
replies
192
views
A look inside annotation packages
Annotation
7 weeks ago
Ed Siefker
▴ 230
1
vote
2
replies
4.1k
views
How to convert Illumina HT_12_v4 annotation
convert
R
annotation
microarray
illumina human ht-12 v4
updated 8 weeks ago by
snijesh
▴ 20 • written 5.1 years ago by
p_donchev84
• 0
2
votes
3
replies
272
views
Packages dependent on rtracklayer fail: ERROR: lazy loading failed, unable to load shared object rtracklayer.so
SingleCellMultiModal
ensembldb
rtracklayer
Annotation
updated 10 days ago by
rbj
• 0 • written 10 weeks ago by
Jake
▴ 10
0
votes
5
replies
512
views
Error when annotating ENSEMBLE transcript IDs from chicken annotation DB
R
ensembldb
Annotation
updated 3 months ago by
Guido Hooiveld
★ 3.5k • written 3 months ago by
Mohamed
• 0
0
votes
0
replies
102
views
News:
Bioconductor 3.16 db0s, OrgDbs and TxDbs now available
release
db0
annotation
4 months ago
kayla.interdonato
140
0
votes
1
reply
167
views
Annotation data packages for plant parasitic nematodes
AnnotationData
Annotation
updated 4 months ago by
James W. MacDonald
62k • written 4 months ago by
Hassanaly
• 0
1
vote
3
replies
380
views
Trouble importing my own Gene Ontology Annotation into topGO
Annotation
GeneOntology
topGO
GO
updated 7 months ago by
James W. MacDonald
62k • written 7 months ago by
Raito92
▴ 60
0
votes
1
reply
269
views
News:
Bioconductor 3.15 db0s, OrgDbs and TxDbs now available
annotation
release
db0
9 months ago
kayla.interdonato
140
0
votes
0
replies
210
views
low mapping between annotated genome and transcriptome
transcriptome
Annotation
mapping
10 months ago
Ava
• 0
0
votes
1
reply
326
views
peak annotation
ChIPpeakAnno
Annotation
updated 9 months ago by
Kai Hu
▴ 50 • written 10 months ago by
Bogdan
▴ 660
0
votes
0
replies
256
views
using annotation data of an organism(eg. Oryza sativa) from AnnotationHub for mgoSim
AnnotationHubSoftware
GOSemSim
annotation
12 months ago
Amandeep
• 0
0
votes
1
reply
447
views
SNP annotation
SNPRelate
SNP
GWASTools
Annotation
GWASdata
updated 12 months ago by
Stephanie M. Gogarten
▴ 820 • written 14 months ago by
Adrián
• 0
0
votes
1
reply
581
views
How to download annotation package for oryza sativa Japonica and Oryza sativa indica for pathway analysis?
reactomePA
package
annotation
updated 12 months ago by
shepherl
3.4k • written 12 months ago by
mathavanbioinfo
▴ 20
0
votes
0
replies
271
views
Is it possible to output ensembl id for annotatr build_annotations basicgenes?
Annotation
annotatr
13 months ago
Ahdee
▴ 50
0
votes
2
replies
869
views
getBM error in the biomaRt R package
Annotation
updated 5 months ago by
qiz218591
• 0 • written 14 months ago by
arungowda9738
• 0
0
votes
0
replies
408
views
How to get Cytogenetic band for muscles gene by using Biomart or other tools in R
Annotation
biomaRt
ensembldb
14 months ago
Liting
• 0
0
votes
0
replies
273
views
Error with getBM: 'The query to the BioMart webservice returned an invalid result.'
process
annotationTools
AnnotationFilter
Annotation
biomaRt
14 months ago
Shane
• 0
0
votes
1
reply
394
views
Issue with annotation package mouse4302.db
mouse4302.db
annotation
updated 15 months ago by
James W. MacDonald
62k • written 15 months ago by
surajit
• 0
1
vote
1
reply
1.0k
views
Is there any R package for filtering out SNP markers?
Tutorial
annotation
updated 16 months ago by
Kevin Blighe
3.7k • written 3.5 years ago by
prodhan82
▴ 20
0
votes
1
reply
359
views
anotacion para Anopheles Albimanus
anopheles_albimanus
Annotation
updated 16 months ago by
shepherl
3.4k • written 16 months ago by
Fernanda
• 0
3
votes
1
reply
1.2k
views
Converting between UCSC id and gene symbol with bioconductor annotation resources
AnnotationData
AnnotationDbi
annotation
updated 16 months ago by
James W. MacDonald
62k • written 16 months ago by
kstachelek
• 0
1
vote
1
reply
879
views
ComplexHeatmap: Not able to change the annotations size of the heatmap
ComplexHeatmap
Anno
Annotation
updated 17 months ago by
Zuguang Gu
▴ 240 • written 17 months ago by
Ashish Jain
▴ 10
1
vote
2
replies
1.1k
views
mapping mouse ENSEMBL ids to human gene symbol
Annotation
AnnotationDbi
annotate
updated 18 months ago by
James W. MacDonald
62k • written 18 months ago by
cosomol999
• 0
5
votes
10
replies
970
views
How to do annotation with Limma
annotation
limma
updated 19 months ago by
Guido Hooiveld
★ 3.5k • written 20 months ago by
1gagoogag1
• 0
1
vote
2
replies
681
views
trouble with ENSEMBL ids for Org.Ss.eg.db
Annotation
org.Ss.eg.db
AnnotationDbi
20 months ago
carine.genet
• 0
3
votes
9
replies
2.7k
views
LOC gene IDs for characterised genes in annotation files
Annotation
RNAseq
updated 12 months ago by
Lan
• 0 • written 21 months ago by
Chris
• 0
1
vote
0
replies
464
views
News:
Bioconductor 3.13 db0s, OrgDbs and TxDbs now available
annotation
release
db0
21 months ago
kayla.interdonato
140
6
votes
2
replies
763
views
how can I annotate my scRNAseq clusters from a Rat experiment?
scRNAseq
Rattus_norvegicus_Data
annotation
updated 21 months ago by
ATpoint
★ 2.1k • written 21 months ago by
pcantalupo
• 0
0
votes
9
replies
1.0k
views
The GO annotation of fugal species outside of 20 model organisms is outdated
GO
biomartr
annotation
ensemble
fungi
updated 21 months ago by
James W. MacDonald
62k • written 21 months ago by
Bettina
• 0
2
votes
1
reply
523
views
Geno Ontology Analysis using gene symbol
GO.db
Annotation
Clusterprofile
GeneOntology
updated 23 months ago by
Basti
▴ 540 • written 23 months ago by
MOHAMMAD
• 0
0
votes
2
replies
939
views
Annotation for Macaca fascicularis
Macaca_fascicularis
annotation
updated 23 months ago by
James W. MacDonald
62k • written 23 months ago by
Eva
• 0
14
votes
19
replies
16k
views
DESeq2: add annotations (from data frame) to DESeqDataSet
deseq2
annotation
granges
updated 12 months ago by
Nadine
▴ 50 • written 8.3 years ago by
Darya Vanichkina
▴ 120
0
votes
2
replies
1.4k
views
mapping gene type or biotype to ENSEMBL ID
ensembldb
biomaRt
org.Hs.eg.db
Annotation
updated 2.1 years ago by
Johannes Rainer
★ 2.0k • written 2.1 years ago by
Anubhav
• 0
5
votes
8
replies
1.8k
views
how to annotate arrays
affy
annotation
microarray
oligo
updated 2.2 years ago by
James W. MacDonald
62k • written 7.5 years ago by
ben_cossins
• 0
2
votes
6
replies
918
views
How to generate custom annotation for rat genome rn6 in ChIPQC
ChIPQC
annotation
rn6
2.4 years ago • updated 2.2 years ago
Frédéric Crémazy
• 0
7
votes
10
replies
4.9k
views
annotating gene for transcript type/biotype
annotation
homo.sapiens
updated 2.2 years ago by
James W. MacDonald
62k • written 7.3 years ago by
sjmonkley
▴ 40
2
votes
2
replies
1.6k
views
ChIP seeker annotation error
DiffBind
chipseq
ChIPseeker
ChipDb
annotation
2.2 years ago • updated 2.0 years ago
Mar Mar
▴ 20
0
votes
2
replies
567
views
Can we align all the names of the transcripts (GeneRegionTrack) in the plotTracks() output?
Annotation
Alignment
Gviz
2.2 years ago
Vaibhav
• 0
0
votes
4
replies
1.9k
views
Cannot properly finish biomaRt query
software error
annotation
biomart
updated 2.3 years ago by
anhvo711
• 0 • written 2.7 years ago by
bas_work
▴ 10
0
votes
1
reply
421
views
help documentation for keytypes in annotationdbi packages
annotation
updated 2.3 years ago by
kayla.interdonato
140 • written 2.3 years ago by
kstachelek
• 0
1
vote
2
replies
882
views
News:
Final List of Deprecated Packages for Bioc3.12
annotation
software
experimentdata
deprecated
News
2.3 years ago
shepherl
3.4k
0
votes
1
reply
489
views
RNAseq analysis of organism not included in BSgenome using QuasR
annotation
updated 2.3 years ago by
James W. MacDonald
62k • written 2.3 years ago by
anuranjansrathore
• 0
4
votes
3
replies
614
views
key lookup changes with AnnotationDbi version (bug?)
annotation
updated 2.3 years ago by
James W. MacDonald
62k • written 2.3 years ago by
james
▴ 10
0
votes
1
reply
573
views
News:
Bioconductor 3.12 db0s, OrgDbs and TxDbs now available
annotation
db0
news
release
News
2.3 years ago
kayla.interdonato
140
0
votes
3
replies
1.2k
views
biomart archive version
annotation
biomart
2.3 years ago
raakesh_7111
• 0
50 results • Page
1 of 1
Recent ...
Replies
Comment: mas5calls function doesn't work; mirna40cdf problem
by
Berna
• 0
Thank you for the information. I did not know that. Would you have a tip how I could proceed differently?
Comment: Correct use of Likelihood Ratio Test and LFC Shrinkage
by
ayabalbaa1990
• 0
Hi Michael, So I use this res_LRT <- results(dds_lrt) r2=lfcShrink(dds_lrt, coef=7, res=res_LRT) tu run lfcshrink with LRT, is that oko?…
Comment: Combat and dds Object
by
shaimaa
• 0
I used the combat-seq but the deseq complain as its not integer what should i do
Answer: Different summary() and results() values in DeSeq2
by
Basti
▴ 540
summary() tells you the number of genes with low counts, see independant filtering of results in the DESeq2 vignette : https://www.biocondu…
Comment: Atena package - error (new user)
by
beatriz.calvo
▴ 30
Hi Lalani, We have fixed the bug that lead to the error. The new version of the package (with the bug fixed) will be available in 24-48h. …
Votes
Answer: mas5calls function doesn't work; mirna40cdf problem
Issue with bumphunter and TxDb.Hsapiens.UCSC.hg38.knownGene that could be due to S4Vectors or an installation problem
Strand information in a GAlignmentsList object derived from strand-specific paired-end RNA-seq data
Strand information in a GAlignmentsList object derived from strand-specific paired-end RNA-seq data
A: How to translate FASTA file of DNA sequence to protein sequence using Biostrings
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