Showing : Annotation • reset
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SNP annotation
SNPRelate SNP GWASTools Annotation GWASdata
updated 2 days ago by ▴ 820 • written 7 weeks ago by • 0
0
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1
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118
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How to download annotation package for oryza sativa Japonica and Oryza sativa indica for pathway analysis?
reactomePA package annotation
updated 10 days ago by 2.9k • written 10 days ago by ▴ 20
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0
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64
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Is it possible to output ensembl id for annotatr build_annotations basicgenes?
Annotation annotatr
5 weeks ago Ahdee ▴ 50
0
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2
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281
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getBM error in the biomaRt R package
Annotation
8 weeks ago • updated 7 weeks ago arungowda9738 • 0
0
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0
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98
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How to get Cytogenetic band for muscles gene by using Biomart or other tools in R
Annotation biomaRt ensembldb
9 weeks ago Liting • 0
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0
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83
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Error with getBM: 'The query to the BioMart webservice returned an invalid result.'
process annotationTools AnnotationFilter Annotation biomaRt
9 weeks ago Shane • 0
0
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1
reply
135
views
Issue with annotation package mouse4302.db
mouse4302.db annotation
updated 10 weeks ago by 58k • written 10 weeks ago by • 0
1
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1
reply
764
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Is there any R package for filtering out SNP markers?
Tutorial annotation
updated 3 months ago by 3.4k • written 2.5 years ago by ▴ 20
0
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1
reply
175
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anotacion para Anopheles Albimanus
anopheles_albimanus Annotation
updated 4 months ago by 2.9k • written 4 months ago by • 0
2
votes
1
reply
335
views
Converting between UCSC id and gene symbol with bioconductor annotation resources
AnnotationData AnnotationDbi annotation
updated 4 months ago by 58k • written 4 months ago by • 0
1
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1
reply
265
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ComplexHeatmap: Not able to change the annotations size of the heatmap
ComplexHeatmap Anno Annotation
updated 4 months ago by ▴ 220 • written 4 months ago by ▴ 10
1
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2
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263
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mapping mouse ENSEMBL ids to human gene symbol
Annotation AnnotationDbi annotate
updated 6 months ago by 58k • written 6 months ago by • 0
5
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10
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501
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How to do annotation with Limma
annotation limma
updated 7 months ago by ★ 3.2k • written 7 months ago by • 0
1
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2
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316
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trouble with ENSEMBL ids for Org.Ss.eg.db
Annotation org.Ss.eg.db AnnotationDbi
7 months ago carine.genet • 0
3
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4
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703
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LOC gene IDs for characterised genes in annotation files
Annotation RNAseq
8 months ago Chris • 0
1
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0
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241
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News: Bioconductor 3.13 db0s, OrgDbs and TxDbs now available
annotation release db0
8 months ago kayla.interdonato 120
6
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2
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369
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how can I annotate my scRNAseq clusters from a Rat experiment?
scRNAseq Rattus_norvegicus_Data annotation
updated 8 months ago by ▴ 970 • written 8 months ago by • 0
0
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9
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593
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The GO annotation of fugal species outside of 20 model organisms is outdated
GO biomartr annotation ensemble fungi
updated 8 months ago by 58k • written 8 months ago by • 0
2
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1
reply
292
views
Geno Ontology Analysis using gene symbol
GO.db Annotation Clusterprofile GeneOntology
updated 10 months ago by ▴ 160 • written 10 months ago by • 0
0
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2
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324
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Annotation for Macaca fascicularis
Macaca_fascicularis annotation
updated 11 months ago by 58k • written 11 months ago by • 0
11
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17
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13k
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DESeq2: add annotations (from data frame) to DESeqDataSet
deseq2 annotation granges
written 7.2 years ago by ▴ 120
0
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2
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583
views
mapping gene type or biotype to ENSEMBL ID
ensembldb biomaRt org.Hs.eg.db Annotation
updated 12 months ago by ★ 1.9k • written 12 months ago by • 0
5
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8
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1.5k
views
how to annotate arrays
affy annotation microarray oligo
updated 13 months ago by 58k • written 6.5 years ago by • 0
2
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6
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523
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How to generate custom annotation for rat genome rn6 in ChIPQC
ChIPQC annotation rn6
16 months ago • updated 14 months ago Frédéric Crémazy • 0
7
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10
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4.0k
views
annotating gene for transcript type/biotype
annotation homo.sapiens
updated 14 months ago by 58k • written 6.2 years ago by ▴ 30
2
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2
replies
966
views
ChIP seeker annotation error
DiffBind chipseq ChIPseeker ChipDb annotation
14 months ago • updated 11 months ago Mar Mar ▴ 20
0
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2
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331
views
Can we align all the names of the transcripts (GeneRegionTrack) in the plotTracks() output?
Annotation Alignment Gviz
14 months ago Vaibhav • 0
0
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4
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1.5k
views
Cannot properly finish biomaRt query
software error annotation biomart
updated 15 months ago by • 0 • written 19 months ago by ▴ 10
0
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1
reply
234
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help documentation for keytypes in annotationdbi packages
annotation
updated 15 months ago by 120 • written 15 months ago by • 0
1
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2
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662
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News: Final List of Deprecated Packages for Bioc3.12
annotation software experimentdata deprecated News
15 months ago shepherl 2.9k
0
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1
reply
345
views
RNAseq analysis of organism not included in BSgenome using QuasR
annotation
updated 15 months ago by 58k • written 15 months ago by • 0
4
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3
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398
views
key lookup changes with AnnotationDbi version (bug?)
annotation
updated 15 months ago by 58k • written 15 months ago by ▴ 10
0
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1
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376
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News: Bioconductor 3.12 db0s, OrgDbs and TxDbs now available
annotation db0 news release News
15 months ago kayla.interdonato 120
0
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3
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589
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biomart archive version
annotation biomart
15 months ago raakesh_7111 • 0
4
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3
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511
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How to resolve NAs when annotating a diff gene list with org.Hs.eg.db terms?
annotation rna
updated 15 months ago by 58k • written 15 months ago by ▴ 20
1
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3
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856
views
Annotating [HuGene-1_0-st] Affymetrix Human Gene 1.0 ST Array [transcript (gene) version] file
microarray annotation affy
15 months ago kiera.lee ▴ 10
0
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3
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267
views
Help! How to convert S-Fe10_GL0038907 to a protein name
annotation
updated 15 months ago by 58k • written 15 months ago by • 0
3
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0
replies
744
views
News: List of Deprecated Packages for Bioc3.12
annotation software experiment data deprecated News
16 months ago shepherl 2.9k
0
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3
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375
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Pathway analysis of bacterial RNA-seq data
annotation rna-seq pathway analysis
16 months ago microPhD • 0
2
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2
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460
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R: Find all genes associated with a genomic range
annotation
updated 16 months ago by 3.4k • written 16 months ago by ▴ 10
3
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1
reply
313
views
How to use Mus.musculus in a package function without polluting namespace?
annotation
updated 16 months ago by 25k • written 16 months ago by ▴ 40
1
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5
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477
views
TCGA: clinical data and expression data
microarray annotation cancer
updated 16 months ago by 3.4k • written 16 months ago by • 0
1
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4
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593
views
biromartr query fail
annotation
updated 16 months ago by ★ 5.3k • written 16 months ago by ▴ 10
4
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17
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864
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annotation conversion from old microarray to latest Entrez and Ensembl ID
biomaRt annotation Ensembl annotationHub
updated 16 months ago by 3.4k • written 16 months ago by ▴ 10
4
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2
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440
views
News: ensembldb EnsDb databases for Ensembl release 101 added to AnnotationHub
EnsDb ensembldb annotation AnnotationHub News
17 months ago Johannes Rainer ★ 1.9k
0
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2
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256
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What is Software, Annotationdata, Experimentdata and workflow category?
Software annotation experiment workflow
updated 17 months ago by 2.9k • written 17 months ago by • 0
2
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4
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668
views
Error in .local(x, i, j = j, ...) : 'i' must be length 1 in using OrganismDbi to create org.XX.eg.db
annotation
updated 17 months ago by 58k • written 17 months ago by • 0
5
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11
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659
views
"associated_gene" attribute from biomaRt returns too few values - SNP(rsID dataset)
r biomart SNP annotation HUGO
updated 17 months ago by ★ 5.3k • written 17 months ago by • 0
2
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3
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350
views
Annotation of Genomic Regions
annotation genomic regions R
updated 17 months ago by 58k • written 17 months ago by • 0
0
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4
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276
views
Genomic Annotation Package Ensembl
Chromosome Annotation
updated 18 months ago by 58k • written 18 months ago by ▴ 20
50 results • Page 1 of 1
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Comment: DiffBind dba.count Error in if (sum(tokeep) < length(tokeep)) by tjhwangxiong • 0
``` https://drive.google.com/drive/folders/1787thVatZpt_KFrfXY-aXV1m0FRm8Mhm?usp=sharing ``` Thanks for your reply. I have uploaded the fil…
Comment: Trying to follow a gene set analyisis in R by Michael Love 35k
No I can’t help with exercises. Just to be clear I’m not affiliated with Harvard and have no supported effort in relation to the edx classe…
Answer: Problems to find the pvalues via rowttests by Gordon Smyth 44k
Ordinary t-tests aren't recommended for genomic analyses because they have poor power and higher false discovery rates. Using the limma p…
Answer: How to insert a qvalues column in a dataframe with pvalues in R by Gordon Smyth 44k
Here and in a previous post, it seems you're not using recommended Bioconductor workflows for Affymetrix microarrays. If you used a standar…
Comment: Trying to follow a gene set analyisis in R by leonardorosas2001 • 0
Thank you. I hope I can still let you know if I have issues with your exercises. They are very challenging but useful! :)
Votes
Answer: Problems to find the pvalues via rowttests
A: How to use subSeq with DNAStringSet and information of GroupedIRanges?
A: How to use subSeq with DNAStringSet and information of GroupedIRanges?
Annotating GRanges with TxDb gene models using plyranges
plyranges select() when a metadata column is shared with core variable
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