Showing : Annotation • reset
2
votes
2
replies
53
views
Is ther an annotation package for sheep (Ovis aries)
sheep database_package Annotation
1 day ago • updated 4 hours ago priscilaramosibeas ▴ 10
0
votes
1
reply
53
views
Bioconductor tool for curating annotations?
Annotation
updated 3 days ago by ▴ 700 • written 4 days ago by ▴ 170
3
votes
2
replies
80
views
I cannot install annotables package in Rstudio (macOS)
DESeq2 PackageTypeData package Annotation
8 days ago • updated 4 days ago m-bihie ▴ 10
1
vote
9
replies
222
views
Is it possible to annotate a GRanges Object that has scaffolding names and not chromosome numbers?
Annotation
updated 11 days ago by 62k • written 16 days ago by • 0
5
votes
13
replies
2.9k
views
How to annotate gene names for genomic coordinates?
annotation
written 7.6 years ago by • 0
0
votes
3
replies
192
views
A look inside annotation packages
Annotation
7 weeks ago Ed Siefker ▴ 230
1
vote
2
replies
4.1k
views
How to convert Illumina HT_12_v4 annotation
convert R annotation microarray illumina human ht-12 v4
updated 8 weeks ago by ▴ 20 • written 5.1 years ago by • 0
2
votes
3
replies
272
views
Packages dependent on rtracklayer fail: ERROR: lazy loading failed, unable to load shared object rtracklayer.so
SingleCellMultiModal ensembldb rtracklayer Annotation
updated 10 days ago by • 0 • written 10 weeks ago by ▴ 10
0
votes
5
replies
512
views
Error when annotating ENSEMBLE transcript IDs from chicken annotation DB
R ensembldb Annotation
updated 3 months ago by ★ 3.5k • written 3 months ago by • 0
0
votes
0
replies
102
views
News: Bioconductor 3.16 db0s, OrgDbs and TxDbs now available
release db0 annotation
4 months ago kayla.interdonato 140
0
votes
1
reply
167
views
Annotation data packages for plant parasitic nematodes
AnnotationData Annotation
updated 4 months ago by 62k • written 4 months ago by • 0
1
vote
3
replies
380
views
Trouble importing my own Gene Ontology Annotation into topGO
Annotation GeneOntology topGO GO
updated 7 months ago by 62k • written 7 months ago by ▴ 60
0
votes
1
reply
269
views
News: Bioconductor 3.15 db0s, OrgDbs and TxDbs now available
annotation release db0
9 months ago kayla.interdonato 140
0
votes
0
replies
210
views
low mapping between annotated genome and transcriptome
transcriptome Annotation mapping
10 months ago Ava • 0
0
votes
1
reply
326
views
peak annotation
ChIPpeakAnno Annotation
updated 9 months ago by ▴ 50 • written 10 months ago by ▴ 660
0
votes
0
replies
256
views
using annotation data of an organism(eg. Oryza sativa) from AnnotationHub for mgoSim
AnnotationHubSoftware GOSemSim annotation
12 months ago Amandeep • 0
0
votes
1
reply
447
views
SNP annotation
SNPRelate SNP GWASTools Annotation GWASdata
updated 12 months ago by ▴ 820 • written 14 months ago by • 0
0
votes
1
reply
581
views
How to download annotation package for oryza sativa Japonica and Oryza sativa indica for pathway analysis?
reactomePA package annotation
updated 12 months ago by 3.4k • written 12 months ago by ▴ 20
0
votes
0
replies
271
views
Is it possible to output ensembl id for annotatr build_annotations basicgenes?
Annotation annotatr
13 months ago Ahdee ▴ 50
0
votes
2
replies
869
views
getBM error in the biomaRt R package
Annotation
updated 5 months ago by • 0 • written 14 months ago by • 0
0
votes
0
replies
408
views
How to get Cytogenetic band for muscles gene by using Biomart or other tools in R
Annotation biomaRt ensembldb
14 months ago Liting • 0
0
votes
0
replies
273
views
Error with getBM: 'The query to the BioMart webservice returned an invalid result.'
process annotationTools AnnotationFilter Annotation biomaRt
14 months ago Shane • 0
0
votes
1
reply
394
views
Issue with annotation package mouse4302.db
mouse4302.db annotation
updated 15 months ago by 62k • written 15 months ago by • 0
1
vote
1
reply
1.0k
views
Is there any R package for filtering out SNP markers?
Tutorial annotation
updated 16 months ago by 3.7k • written 3.5 years ago by ▴ 20
0
votes
1
reply
359
views
anotacion para Anopheles Albimanus
anopheles_albimanus Annotation
updated 16 months ago by 3.4k • written 16 months ago by • 0
3
votes
1
reply
1.2k
views
Converting between UCSC id and gene symbol with bioconductor annotation resources
AnnotationData AnnotationDbi annotation
updated 16 months ago by 62k • written 16 months ago by • 0
1
vote
1
reply
879
views
ComplexHeatmap: Not able to change the annotations size of the heatmap
ComplexHeatmap Anno Annotation
updated 17 months ago by ▴ 240 • written 17 months ago by ▴ 10
1
vote
2
replies
1.1k
views
mapping mouse ENSEMBL ids to human gene symbol
Annotation AnnotationDbi annotate
updated 18 months ago by 62k • written 18 months ago by • 0
5
votes
10
replies
970
views
How to do annotation with Limma
annotation limma
updated 19 months ago by ★ 3.5k • written 20 months ago by • 0
1
vote
2
replies
681
views
trouble with ENSEMBL ids for Org.Ss.eg.db
Annotation org.Ss.eg.db AnnotationDbi
20 months ago carine.genet • 0
3
votes
9
replies
2.7k
views
LOC gene IDs for characterised genes in annotation files
Annotation RNAseq
updated 12 months ago by • 0 • written 21 months ago by • 0
1
vote
0
replies
464
views
News: Bioconductor 3.13 db0s, OrgDbs and TxDbs now available
annotation release db0
21 months ago kayla.interdonato 140
6
votes
2
replies
763
views
how can I annotate my scRNAseq clusters from a Rat experiment?
scRNAseq Rattus_norvegicus_Data annotation
updated 21 months ago by ★ 2.1k • written 21 months ago by • 0
0
votes
9
replies
1.0k
views
The GO annotation of fugal species outside of 20 model organisms is outdated
GO biomartr annotation ensemble fungi
updated 21 months ago by 62k • written 21 months ago by • 0
2
votes
1
reply
523
views
Geno Ontology Analysis using gene symbol
GO.db Annotation Clusterprofile GeneOntology
updated 23 months ago by ▴ 540 • written 23 months ago by • 0
0
votes
2
replies
939
views
Annotation for Macaca fascicularis
Macaca_fascicularis annotation
updated 23 months ago by 62k • written 23 months ago by • 0
14
votes
19
replies
16k
views
DESeq2: add annotations (from data frame) to DESeqDataSet
deseq2 annotation granges
updated 12 months ago by ▴ 50 • written 8.3 years ago by ▴ 120
0
votes
2
replies
1.4k
views
mapping gene type or biotype to ENSEMBL ID
ensembldb biomaRt org.Hs.eg.db Annotation
updated 2.1 years ago by ★ 2.0k • written 2.1 years ago by • 0
5
votes
8
replies
1.8k
views
how to annotate arrays
affy annotation microarray oligo
updated 2.2 years ago by 62k • written 7.5 years ago by • 0
2
votes
6
replies
918
views
How to generate custom annotation for rat genome rn6 in ChIPQC
ChIPQC annotation rn6
2.4 years ago • updated 2.2 years ago Frédéric Crémazy • 0
7
votes
10
replies
4.9k
views
annotating gene for transcript type/biotype
annotation homo.sapiens
updated 2.2 years ago by 62k • written 7.3 years ago by ▴ 40
2
votes
2
replies
1.6k
views
ChIP seeker annotation error
DiffBind chipseq ChIPseeker ChipDb annotation
2.2 years ago • updated 2.0 years ago Mar Mar ▴ 20
0
votes
2
replies
567
views
Can we align all the names of the transcripts (GeneRegionTrack) in the plotTracks() output?
Annotation Alignment Gviz
2.2 years ago Vaibhav • 0
0
votes
4
replies
1.9k
views
Cannot properly finish biomaRt query
software error annotation biomart
updated 2.3 years ago by • 0 • written 2.7 years ago by ▴ 10
0
votes
1
reply
421
views
help documentation for keytypes in annotationdbi packages
annotation
updated 2.3 years ago by 140 • written 2.3 years ago by • 0
1
vote
2
replies
882
views
News: Final List of Deprecated Packages for Bioc3.12
annotation software experimentdata deprecated News
2.3 years ago shepherl 3.4k
0
votes
1
reply
489
views
RNAseq analysis of organism not included in BSgenome using QuasR
annotation
updated 2.3 years ago by 62k • written 2.3 years ago by • 0
4
votes
3
replies
614
views
key lookup changes with AnnotationDbi version (bug?)
annotation
updated 2.3 years ago by 62k • written 2.3 years ago by ▴ 10
0
votes
1
reply
573
views
News: Bioconductor 3.12 db0s, OrgDbs and TxDbs now available
annotation db0 news release News
2.3 years ago kayla.interdonato 140
0
votes
3
replies
1.2k
views
biomart archive version
annotation biomart
2.3 years ago raakesh_7111 • 0
50 results • Page 1 of 1
Recent ...
Replies
Comment: mas5calls function doesn't work; mirna40cdf problem by Berna • 0
Thank you for the information. I did not know that. Would you have a tip how I could proceed differently?
Comment: Correct use of Likelihood Ratio Test and LFC Shrinkage by ayabalbaa1990 • 0
Hi Michael, So I use this res_LRT <- results(dds_lrt) r2=lfcShrink(dds_lrt, coef=7, res=res_LRT) tu run lfcshrink with LRT, is that oko?…
Comment: Combat and dds Object by shaimaa • 0
I used the combat-seq but the deseq complain as its not integer what should i do
Answer: Different summary() and results() values in DeSeq2 by Basti ▴ 540
summary() tells you the number of genes with low counts, see independant filtering of results in the DESeq2 vignette : https://www.biocondu…
Comment: Atena package - error (new user) by beatriz.calvo ▴ 30
Hi Lalani, We have fixed the bug that lead to the error. The new version of the package (with the bug fixed) will be available in 24-48h. …
Votes
Answer: mas5calls function doesn't work; mirna40cdf problem
Issue with bumphunter and TxDb.Hsapiens.UCSC.hg38.knownGene that could be due to S4Vectors or an installation problem
Strand information in a GAlignmentsList object derived from strand-specific paired-end RNA-seq data
Strand information in a GAlignmentsList object derived from strand-specific paired-end RNA-seq data
A: How to translate FASTA file of DNA sequence to protein sequence using Biostrings
Awards • All
Popular Question to Guido Hooiveld ★ 3.5k
Scholar to James W. MacDonald 62k
Commentator to Michael Love 39k
Popular Question to twtoal ▴ 10
Student to L ▴ 40
Locations • All
United States, just now
India, 6 minutes ago
United States, 8 minutes ago
Latvia, 9 minutes ago
Germany, 24 minutes ago
Traffic: 522 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6