Showing : Annotation • reset
1
vote
2
replies
101
views
mapping mouse ENSEMBL ids to human gene symbol
Annotation AnnotationDbi annotate
updated 12 days ago by 57k • written 13 days ago by • 0
5
votes
10
replies
294
views
How to do annotation with Limma
annotation limma
updated 6 weeks ago by ★ 3.0k • written 6 weeks ago by • 0
1
vote
2
replies
144
views
trouble with ENSEMBL ids for Org.Ss.eg.db
Annotation org.Ss.eg.db AnnotationDbi
7 weeks ago carine.genet • 0
3
votes
4
replies
261
views
LOC gene IDs for characterised genes in annotation files
Annotation RNAseq
11 weeks ago • updated 10 weeks ago Chris • 0
1
vote
0
replies
123
views
News: Bioconductor 3.13 db0s, OrgDbs and TxDbs now available
annotation release db0
11 weeks ago kayla.interdonato 120
6
votes
2
replies
176
views
how can I annotate my scRNAseq clusters from a Rat experiment?
scRNAseq Rattus_norvegicus_Data annotation
updated 11 weeks ago by ▴ 700 • written 11 weeks ago by • 0
0
votes
9
replies
354
views
The GO annotation of fugal species outside of 20 model organisms is outdated
GO biomartr annotation ensemble fungi
updated 11 weeks ago by 57k • written 3 months ago by • 0
2
votes
1
reply
164
views
Geno Ontology Analysis using gene symbol
GO.db Annotation Clusterprofile GeneOntology
updated 4 months ago by ▴ 150 • written 4 months ago by • 0
0
votes
2
replies
144
views
Annotation for Macaca fascicularis
Macaca_fascicularis annotation
updated 5 months ago by 57k • written 5 months ago by • 0
11
votes
17
replies
12k
views
DESeq2: add annotations (from data frame) to DESeqDataSet
deseq2 annotation granges
written 6.8 years ago by ▴ 120
0
votes
2
replies
261
views
mapping gene type or biotype to ENSEMBL ID
ensembldb biomaRt org.Hs.eg.db Annotation
updated 6 months ago by ★ 1.9k • written 6 months ago by • 0
5
votes
8
replies
1.2k
views
how to annotate arrays
affy annotation microarray oligo
updated 7 months ago by 57k • written 6.0 years ago by • 0
2
votes
6
replies
345
views
How to generate custom annotation for rat genome rn6 in ChIPQC
ChIPQC annotation rn6
10 months ago • updated 8 months ago Frédéric Crémazy • 0
7
votes
10
replies
3.7k
views
annotating gene for transcript type/biotype
annotation homo.sapiens
updated 8 months ago by 57k • written 5.7 years ago by ▴ 30
0
votes
2
replies
520
views
ChIP seeker annotation error
DiffBind chipseq ChIPseeker ChipDb annotation
8 months ago • updated 5 months ago Mar Mar • 0
0
votes
2
replies
197
views
Can we align all the names of the transcripts (GeneRegionTrack) in the plotTracks() output?
Annotation Alignment Gviz
8 months ago Vaibhav • 0
0
votes
4
replies
956
views
Cannot properly finish biomaRt query
software error annotation biomart
updated 9 months ago by • 0 • written 13 months ago by ▴ 10
0
votes
1
reply
152
views
help documentation for keytypes in annotationdbi packages
annotation
updated 9 months ago by 120 • written 9 months ago by • 0
1
vote
2
replies
406
views
News: Final List of Deprecated Packages for Bioc3.12
annotation software experimentdata deprecated News
9 months ago shepherl 2.8k
0
votes
1
reply
196
views
RNAseq analysis of organism not included in BSgenome using QuasR
annotation
updated 9 months ago by 57k • written 9 months ago by • 0
4
votes
3
replies
275
views
key lookup changes with AnnotationDbi version (bug?)
annotation
updated 9 months ago by 57k • written 9 months ago by ▴ 10
0
votes
1
reply
226
views
News: Bioconductor 3.12 db0s, OrgDbs and TxDbs now available
annotation db0 news release News
9 months ago kayla.interdonato 120
0
votes
3
replies
338
views
biomart archive version
annotation biomart
9 months ago raakesh_7111 • 0
4
votes
3
replies
295
views
How to resolve NAs when annotating a diff gene list with org.Hs.eg.db terms?
annotation rna
updated 9 months ago by 57k • written 9 months ago by ▴ 20
1
vote
3
replies
509
views
Annotating [HuGene-1_0-st] Affymetrix Human Gene 1.0 ST Array [transcript (gene) version] file
microarray annotation affy
9 months ago kiera.lee ▴ 10
0
votes
3
replies
184
views
Help! How to convert S-Fe10_GL0038907 to a protein name
annotation
updated 9 months ago by 57k • written 9 months ago by • 0
3
votes
0
replies
594
views
News: List of Deprecated Packages for Bioc3.12
annotation software experiment data deprecated News
10 months ago shepherl 2.8k
0
votes
3
replies
245
views
Pathway analysis of bacterial RNA-seq data
annotation rna-seq pathway analysis
10 months ago microPhD • 0
2
votes
2
replies
254
views
R: Find all genes associated with a genomic range
annotation
updated 10 months ago by 3.2k • written 10 months ago by ▴ 10
3
votes
1
reply
182
views
How to use Mus.musculus in a package function without polluting namespace?
annotation
updated 10 months ago by 25k • written 10 months ago by ▴ 40
1
vote
5
replies
277
views
TCGA: clinical data and expression data
microarray annotation cancer
updated 10 months ago by 3.2k • written 10 months ago by • 0
1
vote
4
replies
427
views
biromartr query fail
annotation
updated 10 months ago by ★ 5.0k • written 10 months ago by ▴ 10
4
votes
17
replies
591
views
annotation conversion from old microarray to latest Entrez and Ensembl ID
biomaRt annotation Ensembl annotationHub
updated 11 months ago by 3.2k • written 11 months ago by ▴ 10
4
votes
2
replies
265
views
News: ensembldb EnsDb databases for Ensembl release 101 added to AnnotationHub
EnsDb ensembldb annotation AnnotationHub News
11 months ago Johannes Rainer ★ 1.9k
0
votes
2
replies
170
views
What is Software, Annotationdata, Experimentdata and workflow category?
Software annotation experiment workflow
updated 11 months ago by 2.8k • written 11 months ago by • 0
2
votes
4
replies
419
views
Error in .local(x, i, j = j, ...) : 'i' must be length 1 in using OrganismDbi to create org.XX.eg.db
annotation
updated 11 months ago by 57k • written 11 months ago by • 0
5
votes
11
replies
452
views
"associated_gene" attribute from biomaRt returns too few values - SNP(rsID dataset)
r biomart SNP annotation HUGO
updated 11 months ago by ★ 5.0k • written 11 months ago by • 0
2
votes
3
replies
246
views
Annotation of Genomic Regions
annotation genomic regions R
updated 11 months ago by 57k • written 11 months ago by • 0
0
votes
4
replies
194
views
Genomic Annotation Package Ensembl
Chromosome Annotation
updated 12 months ago by 57k • written 12 months ago by ▴ 10
0
votes
0
replies
116
views
ChIPpeakanno annotation results interpretation
annotation
12 months ago gisapassaia • 0
1
vote
2
replies
169
views
RNA Seq from MusMusculus and HomoSapiens
tximeta tximport annotation
updated 12 months ago by 33k • written 12 months ago by • 0
2
votes
1
reply
184
views
AnnotationHub errors when querying
annotation
updated 13 months ago by ★ 3.0k • written 13 months ago by ▴ 10
1
vote
3
replies
182
views
Mixed-up column names for getBM()?
annotation
updated 13 months ago by 57k • written 13 months ago by • 0
2
votes
3
replies
256
views
EnsDb.Rnorvegicus for Rnor6
annotation db reference rnor6
updated 13 months ago by ★ 3.0k • written 13 months ago by • 0
3
votes
6
replies
222
views
Extremely big genes in annotation TxDb packages
annotation txdb AnnotationData Genetics
updated 13 months ago by 57k • written 13 months ago by ▴ 10
0
votes
4
replies
264
views
Wrong annotation (TSS/TTS) for many genes: keytype="GENEID" with mapIds(TxDb.Mmusculus.UCSC.mm10.knownGene)
AnnotationDbi annotation TxDb.Mmusculus.UCSC.mm10.knownGene
updated 13 months ago by 57k • written 13 months ago by • 0
1
vote
3
replies
145
views
Use Tx2Gene for Annotation
deseq2 annotation r
updated 13 months ago by 33k • written 13 months ago by • 0
1
vote
6
replies
1.1k
views
Change fontsize/remove name of annotation ComplexHeatmap package
r rnaseq complexHeatmap annotation
updated 13 months ago by ▴ 210 • written 13 months ago by ▴ 10
0
votes
0
replies
135
views
The error when using "coMET" package
software error annotation
13 months ago yueli.yao • 0
2
votes
2
replies
150
views
Goseq analysis related help.
annotation goseq
updated 13 months ago by 13k • written 13 months ago by • 0
50 results • Page 1 of 1
Recent ...
Replies
Comment: Selecting pairs of exons from differentially spliced genes by jamie.gearing ▴ 40
That is fair enough. Sensible is always reassuring to hear! Thanks very much for your input Gordon. Best regards, Jamie.
Answer: Selecting pairs of exons from differentially spliced genes by Gordon Smyth 43k
Choosing a representative pair of exons is not part of our method, so we won't make any recommendations. You should choose the exons wit…
Comment: combineTwoExpressionSet from a4Base is not working properly by russ.bainer • 0
I ran across this bug as well- the issue is related to the code failing to reorder the ExpressionSet rows prior to merging. A workaround fo…
Comment: Best practice for quantifying sncRNA by Abhishek • 0
k has to be odd - trying 9, 21 instead
Comment: Best practice for quantifying sncRNA by Abhishek • 0
I did use the genome as decoy. And I used whole transcriptome from Gencode for indexing. Maybe I should index using just non coding transc…
Votes
Answer: Selecting pairs of exons from differentially spliced genes
Comment: Idea: Using DESeq2 to test a change in ratio of two genes
Time Series Analysis
Comment: Time series DE gene analysis with edgeR where specific timepoints have NA levels
Comment: Time series DE gene analysis with edgeR where specific timepoints have NA levels
Awards • All
Popular Question to Gordon Smyth 43k
Teacher to JP Carter ▴ 40
Popular Question to amalthomas111 • 0
Scholar to gabriel.hoffman ▴ 90
Popular Question to Thomas Maurel ▴ 790
Locations • All
United Kingdom, just now
Wageningen University, Wageningen, the Netherlands, 4 minutes ago
Sweden, 6 minutes ago
Sweden, 14 minutes ago
China, 18 minutes ago
Traffic: 682 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6