News:Bioconductor 3.15 db0s, OrgDbs and TxDbs now available
0
0
Entering edit mode
@kaylainterdonato-17327
Last seen 10 months ago
United States

Hello Bioconductor Community!

The newest db0s, OrgDbs, and TxDbs annotation packages for the upcoming Bioconductor 3.13 release are up and available for download in the devel version of Bioconductor.

The deadline for submitting contributed annotations will be Wednesday April 13th.

The new db0 packages are:

  • anopheles.db0_3.15.0.tar.gz
  • arabidopsis.db0_3.15.0.tar.gz
  • bovine.db0_3.15.0.tar.gz
  • canine.db0_3.15.0.tar.gz
  • chicken.db0_3.15.0.tar.gz
  • chimp.db0_3.15.0.tar.gz
  • ecoliK12.db0_3.15.0.tar.gz
  • ecoliSakai.db0_3.15.0.tar.gz
  • fly.db0_3.15.0.tar.gz
  • human.db0_3.15.0.tar.gz
  • malaria.db0_3.15.0.tar.gz
  • mouse.db0_3.15.0.tar.gz
  • pig.db0_3.15.0.tar.gz
  • rat.db0_3.15.0.tar.gz
  • rhesus.db0_3.15.0.tar.gz
  • worm.db0_3.15.0.tar.gz
  • xenopus.db0_3.15.0.tar.gz
  • yeast.db0_3.15.0.tar.gz
  • zebrafish.db0_3.15.0.tar.gz

The new OrgDb packages are:

  • GO.db_3.15.0.tar.gz
  • org.Ag.eg.db_3.15.0.tar.gz
  • org.At.tair.db_3.15.0.tar.gz
  • org.Bt.eg.db_3.15.0.tar.gz
  • org.Ce.eg.db_3.15.0.tar.gz
  • org.Cf.eg.db_3.15.0.tar.gz
  • org.Dm.eg.db_3.15.0.tar.gz
  • org.Dr.eg.db_3.15.0.tar.gz
  • org.EcK12.eg.db_3.15.0.tar.gz
  • org.EcSakai.eg.db_3.15.0.tar.gz
  • org.Gg.eg.db_3.15.0.tar.gz
  • org.Hs.eg.db_3.15.0.tar.gz
  • org.Mm.eg.db_3.15.0.tar.gz
  • org.Mmu.eg.db_3.15.0.tar.gz
  • org.Pt.eg.db_3.15.0.tar.gz
  • org.Rn.eg.db_3.15.0.tar.gz
  • org.Sc.eg.db_3.15.0.tar.gz
  • org.Ss.eg.db_3.15.0.tar.gz
  • org.Xl.eg.db_3.15.0.tar.gz
  • Orthology.eg.db_3.15.0.tar.gz
  • PFAM.db_3.15.0.tar.gz

The new TxDb packages are:

  • TxDb.Hsapiens.UCSC.hg38.knownGene_3.15.0.tar.gz
  • TxDb.Hsapiens.UCSC.hg38.refGene_3.15.0.tar.gz
  • TxDb.Rnorvegicus.UCSC.rn7.refGene_3.15.0.tar.gz

Thank you!

annotation release db0 • 1.2k views
ADD COMMENT
0
Entering edit mode

It was brought to our attention that there was an issue with the Arabidopsis annotation packages that were built for this release. The issue was resolved and new versions of the packages are now available. We have also have an updated TxDb package for this release that I forgot to add to the list below.

Updated db0 package:

  • arabidopsis.db0_3.15.1.tar.gz

Updated OrgDb package:

  • org.At.tair.db_3.15.1.tar.gz

New TxDb package:

  • TxDb.Celegans.UCSC.ce11.ensGene_3.15.0.tar.gz
ADD REPLY

Login before adding your answer.

Traffic: 525 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6