News:Bioconductor 3.15 db0s, OrgDbs and TxDbs now available
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@kaylainterdonato-17327
Last seen 9 months ago
United States

Hello Bioconductor Community!

The newest db0s, OrgDbs, and TxDbs annotation packages for the upcoming Bioconductor 3.13 release are up and available for download in the devel version of Bioconductor.

The deadline for submitting contributed annotations will be Wednesday April 13th.

The new db0 packages are:

  • anopheles.db0_3.15.0.tar.gz
  • arabidopsis.db0_3.15.0.tar.gz
  • bovine.db0_3.15.0.tar.gz
  • canine.db0_3.15.0.tar.gz
  • chicken.db0_3.15.0.tar.gz
  • chimp.db0_3.15.0.tar.gz
  • ecoliK12.db0_3.15.0.tar.gz
  • ecoliSakai.db0_3.15.0.tar.gz
  • fly.db0_3.15.0.tar.gz
  • human.db0_3.15.0.tar.gz
  • malaria.db0_3.15.0.tar.gz
  • mouse.db0_3.15.0.tar.gz
  • pig.db0_3.15.0.tar.gz
  • rat.db0_3.15.0.tar.gz
  • rhesus.db0_3.15.0.tar.gz
  • worm.db0_3.15.0.tar.gz
  • xenopus.db0_3.15.0.tar.gz
  • yeast.db0_3.15.0.tar.gz
  • zebrafish.db0_3.15.0.tar.gz

The new OrgDb packages are:

  • GO.db_3.15.0.tar.gz
  • org.Ag.eg.db_3.15.0.tar.gz
  • org.At.tair.db_3.15.0.tar.gz
  • org.Bt.eg.db_3.15.0.tar.gz
  • org.Ce.eg.db_3.15.0.tar.gz
  • org.Cf.eg.db_3.15.0.tar.gz
  • org.Dm.eg.db_3.15.0.tar.gz
  • org.Dr.eg.db_3.15.0.tar.gz
  • org.EcK12.eg.db_3.15.0.tar.gz
  • org.EcSakai.eg.db_3.15.0.tar.gz
  • org.Gg.eg.db_3.15.0.tar.gz
  • org.Hs.eg.db_3.15.0.tar.gz
  • org.Mm.eg.db_3.15.0.tar.gz
  • org.Mmu.eg.db_3.15.0.tar.gz
  • org.Pt.eg.db_3.15.0.tar.gz
  • org.Rn.eg.db_3.15.0.tar.gz
  • org.Sc.eg.db_3.15.0.tar.gz
  • org.Ss.eg.db_3.15.0.tar.gz
  • org.Xl.eg.db_3.15.0.tar.gz
  • Orthology.eg.db_3.15.0.tar.gz
  • PFAM.db_3.15.0.tar.gz

The new TxDb packages are:

  • TxDb.Hsapiens.UCSC.hg38.knownGene_3.15.0.tar.gz
  • TxDb.Hsapiens.UCSC.hg38.refGene_3.15.0.tar.gz
  • TxDb.Rnorvegicus.UCSC.rn7.refGene_3.15.0.tar.gz

Thank you!

annotation release db0 • 1.1k views
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It was brought to our attention that there was an issue with the Arabidopsis annotation packages that were built for this release. The issue was resolved and new versions of the packages are now available. We have also have an updated TxDb package for this release that I forgot to add to the list below.

Updated db0 package:

  • arabidopsis.db0_3.15.1.tar.gz

Updated OrgDb package:

  • org.At.tair.db_3.15.1.tar.gz

New TxDb package:

  • TxDb.Celegans.UCSC.ce11.ensGene_3.15.0.tar.gz
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