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Showing :
db0
•
reset
0
votes
0
replies
99
views
News:
Bioconductor 3.16 db0s, OrgDbs and TxDbs now available
release
db0
annotation
4 months ago
kayla.interdonato
140
0
votes
1
reply
263
views
News:
Bioconductor 3.15 db0s, OrgDbs and TxDbs now available
annotation
release
db0
9 months ago
kayla.interdonato
140
1
vote
0
replies
460
views
News:
Bioconductor 3.13 db0s, OrgDbs and TxDbs now available
annotation
release
db0
20 months ago
kayla.interdonato
140
0
votes
1
reply
568
views
News:
Bioconductor 3.12 db0s, OrgDbs and TxDbs now available
annotation
db0
news
release
News
2.3 years ago
kayla.interdonato
140
0
votes
0
replies
342
views
News:
Bioconductor 3.11 db0s are available
annotation
db0
news
release
News
2.8 years ago
kayla.interdonato
140
0
votes
0
replies
383
views
News:
Bioconductor 3.10 db0s are available
news
release
annotation
db0
deadline
News
3.3 years ago
kayla.interdonato
140
0
votes
0
replies
616
views
ka
Annotation
db0
Annotation
db0
9.3 years ago
Guest User
★ 12k
0
votes
2
replies
1.4k
views
problem with makeOrgPackageFromNCBI (for Chinese hamster)
Annotation
GO
db0
PROcess
Annotation
GO
db0
PROcess
updated 9.4 years ago by
Marc Carlson
★ 7.2k • written 9.4 years ago by
Guido Hooiveld
★ 3.5k
0
votes
1
reply
737
views
Add new affy organism platform
Microarray
Annotation
Organism
cdf
db0
probe
annotate
affy
Microarray
Annotation
cdf
updated 9.7 years ago by
Marc Carlson
★ 7.2k • written 9.7 years ago by
Ekta Jain
▴ 50
0
votes
0
replies
1.1k
views
450K annotation: discrepancy between GEO GPL and Bioconductor annotation
Annotation
db0
probe
annotate
PROcess
GenomicFeatures
GenomicRanges
Annotation
db0
probe
10.3 years ago
Marc Carlson
★ 7.2k
0
votes
1
reply
761
views
building an annotation library from scratch
miRNA
Annotation
Organism
db0
AnnotationDbi
microRNA
miRNA
Annotation
Organism
db0
updated 13.2 years ago by
Marc Carlson
★ 7.2k • written 13.2 years ago by
James F. Reid
▴ 610
0
votes
0
replies
801
views
building an annotation library from scratch
miRNA
Annotation
db0
AnnotationDbi
miRNA
Annotation
db0
AnnotationDbi
13.2 years ago
Guido Hooiveld
★ 3.5k
0
votes
2
replies
1.4k
views
GO terms for E. coli micro arrays (ecoliK12.db generation)
Annotation
GO
Yeast
db0
probe
topGO
AnnotationDbi
Annotation
GO
Yeast
db0
probe
topGO
updated 13.6 years ago by
Marc Carlson
★ 7.2k • written 13.6 years ago by
Gaspard Lequeux
▴ 20
0
votes
0
replies
671
views
hyperGTest, different Results using different annotation packages
Microarray
Annotation
GO
ChipName
db0
GOstats
Category
Microarray
Annotation
GO
ChipName
13.8 years ago
Wiebke Iffert
▴ 20
0
votes
1
reply
775
views
memory corruption in make.cdf.package() reading binary CDF with BioC 2.3
cdf
db0
cdf
db0
updated 14.2 years ago by
Wolfgang Huber
13k • written 14.2 years ago by
Don Maszle
▴ 10
0
votes
1
reply
1.3k
views
problem with AnnotationDbi
ChipName
db0
affy
Category
AnnotationDbi
ChipName
db0
affy
Category
AnnotationDbi
updated 14.3 years ago by
Hervé Pagès
16k • written 14.3 years ago by
Mark W Kimpel
▴ 830
0
votes
2
replies
987
views
GO over representation analysis
Annotation
Pathways
GO
Organism
db0
AnnBuilder
PROcess
maanova
AnnotationDbi
Annotation
updated 14.4 years ago by
Kort, Eric
▴ 220 • written 14.4 years ago by
Marc Carlson
★ 7.2k
17 results • Page
1 of 1
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Replies
Comment: edgeR: Usage of estimated dispersion from replicates for pools of the same exper
by
k.roelfs
• 0
I felt that my way of analyzing this data set was a bit unfortunate. I was not involved in the experimental design myself and am now trying…
Comment: edgeR: Usage of estimated dispersion from replicates for pools of the same exper
by
k.roelfs
• 0
For tissue T1 and each time point, each replicate corresponds to a single plant. For tissue T2, we actually had to sample 5 plants per rep…
Answer: edgeR: Usage of estimated dispersion from replicates for pools of the same exper
by
Gordon Smyth
47k
> Due to the high degree of heterozygosity of the plants used for the experiment, we thought it best to pool the same tissue under the same…
Comment: edgeR: Usage of estimated dispersion from replicates for pools of the same exper
by
Gordon Smyth
47k
How many plants are used for each of the biological replicate samples? One plant or a few?
Comment: edgeR: Usage of estimated dispersion from replicates for pools of the same exper
by
k.roelfs
• 0
Yes you are right, we have 24 RNA-seq libraries in total. The replicates come from the same population of plants, but independent from tho…
Votes
DESeq2 pairwise comparisons w/ 3 factors
A: DESeq2 pairwise comparisons w/ 3 factors
A: DESeq2 pairwise comparisons w/ 3 factors
Comment: MA plot
Comment: MA plot
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