xcms crashes R 4.2.0, also unable to install IPO or msdata
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mba • 0
@8c855e54
Last seen 2.1 years ago
United States

Install for IPO and msdata both fail, with a simple "lazy loading fails" message (IPO shown below)

I thought maybe one of the dependencies was missing, tried to run xcms, but whenever I call the library, R shuts down unceremoniously.

Any ideas for a fix?

sessionInfo( )

BiocManager::install("IPO")

library(xcms)

1: session info

R version 4.2.0 (2022-04-22 ucrt) Platform: x86_64-w64-mingw32/x64 (64-bit) Running under: Windows 10 x64 (build 19044)

Matrix products: default

locale: [1] LC_COLLATE=English_United States.utf8 [2] LC_CTYPE=English_United States.utf8
[3] LC_MONETARY=English_United States.utf8 [4] LC_NUMERIC=C
[5] LC_TIME=English_United States.utf8

attached base packages: [1] stats graphics grDevices utils datasets methods base

loaded via a namespace (and not attached): [1] compiler_4.2.0

2: install

'getOption("repos")' replaces Bioconductor standard repositories, see '?repositories' for details

replacement repositories: CRAN: https://rweb.crmda.ku.edu/cran/

Bioconductor version 3.15 (BiocManager 1.30.17), R 4.2.0 (2022-04-22 ucrt) Installing package(s) 'IPO' installing the source package ‘IPO’

trying URL 'https://bioconductor.org/packages/3.15/bioc/src/contrib/IPO_1.21.0.tar.gz' Content type 'application/x-gzip' length 745613 bytes (728 KB) downloaded 728 KB

Back again, I see, it's Tue May 3 14:30:57 2022 # this is a message I put into .Renviron

  • installing source package 'IPO' ... using staged installation R inst byte-compile and prepare package for lazy loading

Back again, I see, it's Tue May 3 14:30:58 2022 ERROR: lazy loading failed for package 'IPO'

  • removing 'C:/Users/bgandre/Documents/R/R_library/IPO'

The downloaded source packages are in ‘C:\Users\bgandre\AppData\Local\Temp\RtmpI3TQkh\downloaded_packages’ Warning message: In install.packages(...) : installation of package ‘IPO’ had non-zero exit status

3 xcms?

IPO msdata xcms • 680 views
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