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Showing :
xcms
•
reset
0
votes
2
replies
178
views
Error: BiocParallel errors
xcms
msdata
BiocParallel
22 days ago • updated 16 days ago
mavamay
• 0
0
votes
0
replies
139
views
mzTab-M in XCMS
xcms
mzTab-M
iterativehierarchicalprocessing
FBMN
3 months ago
Abrianna
• 0
0
votes
1
reply
223
views
How to get around the warning message: mzR has been built against a different Rcpp version
xcms
mzR
updated 5 months ago by
ATpoint
★ 3.4k • written 5 months ago by
lxl13260684135
• 0
0
votes
0
replies
145
views
XCMS normalization
xcms
7 months ago
T.RU
• 0
0
votes
1
reply
374
views
msPurity::spectralMatching Error in getSmeta(con, pids) : No meta data for spectra available
msPurity
Metabolomics
Bioconductor
xcms
spectralMatching
updated 7 months ago by
thomas.nigel.lawson
• 0 • written 11 months ago by
hp71727
▴ 10
0
votes
0
replies
307
views
dont find xcmsSet for peak analysis
xcms
11 months ago
aline.lafise
• 0
1
vote
4
replies
1.2k
views
xcmsRaw not reading data files in: invalid class “xcmsFileSource” object
xcms
updated 13 months ago by
jiahui
• 0 • written 2.9 years ago by
garfield320
▴ 30
0
votes
0
replies
474
views
xcms crashes R 4.2.0, also unable to install IPO or msdata
IPO
msdata
xcms
16 months ago
mba
• 0
5
votes
5
replies
759
views
Warning in In chromPeakSpectra: Lazy evaluation queue is not empty, results in NULL object
xcms
Spectra
updated 17 months ago by
Johannes Rainer
★ 2.0k • written 17 months ago by
e.terlova
▴ 20
0
votes
3
replies
946
views
Warning messages during intallation of XCMS
xcms
Install
updated 18 months ago by
James W. MacDonald
63k • written 19 months ago by
Fanny-shufan
• 0
0
votes
0
replies
452
views
BiocParallel errors in XCMS peak-picking
BiocParallel
xcms
biocparallel
22 months ago
noerman
• 0
0
votes
4
replies
11k
views
hclust(d, method = method) : NA/NaN/Inf in foreign function call (arg 10)
R
pheatmap
xcms
updated 13 months ago by
James W. MacDonald
63k • written 2.1 years ago by
onokaisaac
• 0
0
votes
2
replies
1.1k
views
colMax is not exported from the xcms package
xcms
2.3 years ago
Habil Zare
▴ 170
0
votes
0
replies
491
views
Mass spec intensity difference
xcms
2.4 years ago
Phytochem
• 0
0
votes
0
replies
480
views
Running > 100 samples per group - memory issues
xcms
memory
findchrompeaks
2.5 years ago
abrsoule
▴ 30
0
votes
0
replies
1.1k
views
BiocParallel errors with xcms
BiocParallel
xcms
2.5 years ago
Yuki
▴ 10
1
vote
3
replies
741
views
Inconsistent peak areas ('into') with Matched Filter Param
xcms
updated 2.9 years ago by
Johannes Rainer
★ 2.0k • written 2.9 years ago by
Yuki
▴ 10
0
votes
1
reply
1.0k
views
convert from profile to centroid.
MassSpectrometry
xcms
updated 2.9 years ago by
Laurent Gatto
1.6k • written 2.9 years ago by
dneu1002
• 0
0
votes
3
replies
802
views
Use xcms but mzR occurs error
software error
xcms
updated 3.1 years ago by
Kevin Blighe
3.8k • written 3.1 years ago by
1227450726
• 0
0
votes
4
replies
1.1k
views
Error with xcms - requiring MSnbase 2.15.3 but not installing
software error
xcms
MSnbase
updated 3.1 years ago by
Laurent Gatto
1.6k • written 3.1 years ago by
kramerl
• 0
3
votes
2
replies
597
views
How to get MS spectrum from features extracted with findChromPeaks ?
xcms
updated 3.3 years ago by
Johannes Rainer
★ 2.0k • written 3.3 years ago by
julien.kermorvant
▴ 20
1
vote
2
replies
797
views
Baseline correction for GC-MS data
XCMS
metaMS
updated 3.3 years ago by
ron.wehrens
▴ 20 • written 3.3 years ago by
julien.kermorvant
▴ 20
0
votes
3
replies
998
views
Merging and Aligning LC-MS/MS Data With XCMS (multiple scan ranges/polarities)
XCMS
LC-MS
LC-MS/MS
Alignment
updated 3.4 years ago by
Johannes Rainer
★ 2.0k • written 3.4 years ago by
ljveillon
• 0
2
votes
13
replies
1.5k
views
Found gaps in scan time of file : cut scantime-vector at NA seconds. Error: BiocParallel errors element index: 1, 2, 3, 4, 5, 6 first error: argu…
xcms
adjustRtime
parameters
scantime error
biocparallel error
4.0 years ago
abrsoule
▴ 30
0
votes
5
replies
956
views
runInfo returns startTimeStamp -infinity
lcms
mzR
metabolomics
xcms
MSnbase
updated 4.1 years ago by
Laurent Gatto
1.6k • written 4.1 years ago by
pol.soladelossantos
• 0
2
votes
6
replies
1.2k
views
xcms centwave roiList error
roiList
xcms
centwave
XIC
updated 4.2 years ago by
Johannes Rainer
★ 2.0k • written 4.2 years ago by
roxana
▴ 10
0
votes
1
reply
1.0k
views
XCMS - cannot allocate vector of size **Gb when global environment is empty
r
xcms
4.2 years ago
garfield320
▴ 30
2
votes
1
reply
898
views
mzR unable to open uncorrupted mzXML file
software error
mzR
xcms
4.5 years ago
abrsoule
▴ 30
0
votes
4
replies
2.5k
views
Error when loading MSnbase package "object 'vI' not found"
msnbase
xcms
pheatmap
4.5 years ago
lmg
• 0
0
votes
0
replies
833
views
Job:
Postdoctoral researcher in Computational Metabolomics
metabolomics
xcms
Job
4.6 years ago
Johannes Rainer
★ 2.0k
0
votes
0
replies
1.1k
views
Job:
Postdoctoral researcher in Computational Metabolomics
xcms
metabolomics
population
metabolism
job
Job
updated 4.7 years ago by
Resume101
• 0 • written 4.8 years ago by
Johannes Rainer
★ 2.0k
0
votes
4
replies
1.1k
views
Intensity discrepancy between raw data and XCMS output
xcms
xcmsset
intensity
5.0 years ago
cpataki
• 0
0
votes
9
replies
2.5k
views
Error 'names' attribute must be the same length as the vector xcms
xcms
xcms3
mzxml
5.1 years ago
goh
• 0
3
votes
1
reply
756
views
Does OnDiskMSnExp rewrite original data
xcms
msnbase
ondiskmsnexp
updated 5.1 years ago by
Laurent Gatto
1.6k • written 5.1 years ago by
goh
• 0
0
votes
1
reply
1.3k
views
XCMS for GC-MS
xcms
GC-MS
5.1 years ago
Joe
• 0
0
votes
4
replies
1.4k
views
Chromatographic peak detection failed for all files
xcms
5.2 years ago
yuchiu
• 0
0
votes
1
reply
1.3k
views
Metabolite identification package
xcms
massspectrometry
metabolomics
updated 5.4 years ago by
Johannes Rainer
★ 2.0k • written 5.4 years ago by
johnhamre3
• 0
2
votes
4
replies
1.0k
views
Using massifquant for peak detection of generic matrix data?
xcms
kalman
centwave
yamss
5.6 years ago • updated 5.5 years ago
james.dalgleish
▴ 30
1
vote
2
replies
2.5k
views
ReadMSData problem with xcms
xcms
readmsdata
updated 5.9 years ago by
Johannes Rainer
★ 2.0k • written 5.9 years ago by
bhgyu
▴ 30
1
vote
5
replies
2.7k
views
'names' attribute [12] must be the same length as the vector [6]
R
xcms
vector
5.9 years ago
bhgyu
▴ 30
5
votes
7
replies
1.9k
views
XCMS obiwarp adjustRtime issue
xcms
obiwarp
adjustrtime
metabolomics
updated 5.9 years ago by
Johannes Rainer
★ 2.0k • written 5.9 years ago by
bhgyu
▴ 30
2
votes
1
reply
1.9k
views
Can XCMS search Metlin using MS/MS spectra and provide a similarity score?
xcms
updated 6.2 years ago by
wssdandan2009
• 0 • written 7.6 years ago by
dannel025
▴ 20
0
votes
2
replies
971
views
Problem with mzR and/or Rcpp?
mzr rcpp
mzr
rcpp
XCMS
updated 6.2 years ago by
Laurent Gatto
1.6k • written 6.2 years ago by
elabiead
• 0
0
votes
0
replies
789
views
xcmsFragments extract product fragment
xcms
xcms2
6.2 years ago
riccardo.romoli
• 0
0
votes
1
reply
1.3k
views
New to mass spec data analysis
data analysis
xcms
Tutorial
updated 6.5 years ago by
Gordon Smyth
48k • written 6.5 years ago by
Dan_reichert
• 0
1
vote
1
reply
1.0k
views
xcms warning message
R
xcms
warning message
updated 6.8 years ago by
Johannes Rainer
★ 2.0k • written 6.8 years ago by
deepalikale2007
• 0
0
votes
1
reply
1.1k
views
error when reading .mzML with xcms::xcmsSet
software error
R
mzR
xcms
6.8 years ago
buescher
• 0
1
vote
7
replies
1.9k
views
Can XCMS output continuum/profile data to netCDF format?
xcms
convert
protein
updated 6.8 years ago by
Johannes Rainer
★ 2.0k • written 6.8 years ago by
ray.bacala
• 0
0
votes
1
reply
980
views
get LCMS masses with more significant figures
source code
xcms
m/z
groupval
xcmsSet
updated 6.9 years ago by
Johannes Rainer
★ 2.0k • written 6.9 years ago by
juniormbarga
• 0
0
votes
1
reply
1.2k
views
findneutral xcms xcmsSet
R
metabolomics
LC-MS
xcms
readMzXmlData
updated 6.9 years ago by
James W. MacDonald
63k • written 6.9 years ago by
micheleserra
• 0
50 results • Page
1 of 1
Recent ...
Replies
Comment: DMRcate design
by
James W. MacDonald
63k
That's what identical context means.
Comment: DMRcate design
by
Jitendra
▴ 10
Thanks James, but I did not understand it clearly. Could I used same Limma design matrix for DMRcate?
Comment: Steps needed to change design (relevel factors) in DESeq2
by
jd774
• 0
Thanks for the example code, would the `"condition_1_vs_2"` and `"condition_2_vs_1"` giving same or different results on DEGs and normalize…
Answer: heatmap.2 - change column & row locations; angle / rotate
by
nehagoyal6397
• 0
Window 10 are comes with the new updates [how to fix connections to wireless displays in windows 10](http://fixwindows10connections.com) ju…
Comment: filtering out lowly expressed genes by groups
by
James W. MacDonald
63k
You might want to filter first though. ``` fun <- function(deseqobj, contvec, cutoff) { lildds <- dds[rowMeans(assays(deseqobj…
Votes
Bioconductor 3.18 db0s, OrgDbs, and TxDbs now available
Comment: Timely differentially expressed genes
Comment: NPARC package y-variable
Comment: List of Deprecated Packages for Bioc3.18
Answer: Manual creation of qPCRset does not work
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