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xcms
•
reset
0
votes
1
reply
239
views
How to convert .raw data for use in xcms
xcms
written 6 weeks ago by
Monica
• 0
0
votes
1
reply
458
views
XCMS Data Processing
r
xcms
metabolomi
NTA
Metabolomics
updated 13 months ago by
James W. MacDonald
68k • written 13 months ago by
raklein
• 0
1
vote
3
replies
1.5k
views
Tutorial regarding metabolomics with R
Bioconductor
Metabolomics
xcms
updated 16 months ago by
James W. MacDonald
68k • written 16 months ago by
abhisek001
• 0
0
votes
1
reply
945
views
News:
Subject: Last 2 Seats Available for Metabolomics with R/Bioconductor Course (October 7-10)
Metabolomics
xcms
updated 17 months ago by
Harry
• 0 • written 17 months ago by
info
▴ 10
0
votes
2
replies
4.3k
views
Error: BiocParallel errors
xcms
msdata
BiocParallel
2.5 years ago
mavamay
• 0
0
votes
0
replies
1.1k
views
mzTab-M in XCMS
xcms
mzTab-M
iterativehierarchicalprocessing
FBMN
2.7 years ago
Abrianna
• 0
0
votes
1
reply
1.1k
views
How to get around the warning message: mzR has been built against a different Rcpp version
xcms
mzR
updated 2.9 years ago by
ATpoint
★ 5.0k • written 2.9 years ago by
lxl13260684135
• 0
0
votes
0
replies
813
views
XCMS normalization
xcms
3.0 years ago
T.RU
• 0
0
votes
1
reply
1.1k
views
msPurity::spectralMatching Error in getSmeta(con, pids) : No meta data for spectra available
msPurity
Metabolomics
Bioconductor
xcms
spectralMatching
updated 3.1 years ago by
thomas.nigel.lawson
• 0 • written 3.4 years ago by
hp71727
▴ 10
0
votes
0
replies
773
views
dont find xcmsSet for peak analysis
xcms
3.4 years ago
aline.lafise
• 0
1
vote
4
replies
2.3k
views
xcmsRaw not reading data files in: invalid class “xcmsFileSource” object
xcms
updated 3.6 years ago by
jiahui
• 0 • written 5.3 years ago by
garfield320
▴ 30
0
votes
0
replies
1.1k
views
xcms crashes R 4.2.0, also unable to install IPO or msdata
IPO
msdata
xcms
3.8 years ago
mba
• 0
5
votes
5
replies
1.7k
views
Warning in In chromPeakSpectra: Lazy evaluation queue is not empty, results in NULL object
xcms
Spectra
updated 3.9 years ago by
Johannes Rainer
★ 2.1k • written 3.9 years ago by
e.terlova
▴ 20
0
votes
3
replies
2.2k
views
Warning messages during intallation of XCMS
xcms
Install
updated 4.0 years ago by
James W. MacDonald
68k • written 4.0 years ago by
Fanny-shufan
• 0
0
votes
0
replies
1.1k
views
BiocParallel errors in XCMS peak-picking
BiocParallel
xcms
biocparallel
4.3 years ago
noerman
• 0
0
votes
4
replies
20k
views
hclust(d, method = method) : NA/NaN/Inf in foreign function call (arg 10)
R
pheatmap
xcms
updated 3.5 years ago by
James W. MacDonald
68k • written 4.5 years ago by
onokaisaac
• 0
0
votes
2
replies
2.0k
views
colMax is not exported from the xcms package
xcms
4.8 years ago
Habil Zare
▴ 200
0
votes
0
replies
1.2k
views
Mass spec intensity difference
xcms
4.9 years ago
Phytochem
• 0
0
votes
0
replies
1.1k
views
Running > 100 samples per group - memory issues
xcms
memory
findchrompeaks
4.9 years ago
abrsoule
▴ 30
0
votes
0
replies
2.0k
views
BiocParallel errors with xcms
BiocParallel
xcms
4.9 years ago
Yuki
▴ 10
1
vote
3
replies
1.6k
views
Inconsistent peak areas ('into') with Matched Filter Param
xcms
updated 5.3 years ago by
Johannes Rainer
★ 2.1k • written 5.3 years ago by
Yuki
▴ 10
0
votes
1
reply
2.5k
views
convert from profile to centroid.
MassSpectrometry
xcms
updated 5.3 years ago by
Laurent Gatto
1.6k • written 5.3 years ago by
dneu1002
• 0
0
votes
3
replies
1.8k
views
Use xcms but mzR occurs error
software error
xcms
updated 5.5 years ago by
Kevin Blighe
★ 4.0k • written 5.5 years ago by
1227450726
• 0
0
votes
4
replies
2.4k
views
Error with xcms - requiring MSnbase 2.15.3 but not installing
software error
xcms
MSnbase
updated 5.5 years ago by
Laurent Gatto
1.6k • written 5.5 years ago by
kramerl
• 0
3
votes
2
replies
1.6k
views
How to get MS spectrum from features extracted with findChromPeaks ?
xcms
updated 5.7 years ago by
Johannes Rainer
★ 2.1k • written 5.7 years ago by
julien.kermorvant
▴ 30
1
vote
2
replies
2.0k
views
Baseline correction for GC-MS data
XCMS
metaMS
updated 5.7 years ago by
ron.wehrens
▴ 20 • written 5.7 years ago by
julien.kermorvant
▴ 30
0
votes
3
replies
2.9k
views
Merging and Aligning LC-MS/MS Data With XCMS (multiple scan ranges/polarities)
XCMS
LC-MS
LC-MS/MS
Alignment
updated 5.8 years ago by
Johannes Rainer
★ 2.1k • written 5.8 years ago by
ljveillon
• 0
2
votes
13
replies
3.4k
views
Found gaps in scan time of file : cut scantime-vector at NA seconds. Error: BiocParallel errors element index: 1, 2, 3, 4, 5, 6 first error: argu…
xcms
adjustRtime
parameters
scantime error
biocparallel error
6.5 years ago
abrsoule
▴ 30
0
votes
5
replies
2.1k
views
runInfo returns startTimeStamp -infinity
lcms
mzR
metabolomics
xcms
MSnbase
updated 6.5 years ago by
Laurent Gatto
1.6k • written 6.5 years ago by
pol.soladelossantos
• 0
2
votes
6
replies
2.5k
views
xcms centwave roiList error
roiList
xcms
centwave
XIC
updated 6.6 years ago by
Johannes Rainer
★ 2.1k • written 6.6 years ago by
roxana
▴ 10
0
votes
1
reply
1.9k
views
XCMS - cannot allocate vector of size **Gb when global environment is empty
r
xcms
6.6 years ago
garfield320
▴ 30
2
votes
1
reply
2.0k
views
mzR unable to open uncorrupted mzXML file
software error
mzR
xcms
6.9 years ago
abrsoule
▴ 30
0
votes
4
replies
3.7k
views
Error when loading MSnbase package "object 'vI' not found"
msnbase
xcms
pheatmap
6.9 years ago
lmg
• 0
0
votes
0
replies
1.5k
views
Job:
Postdoctoral researcher in Computational Metabolomics
metabolomics
xcms
Job
7.0 years ago
Johannes Rainer
★ 2.1k
0
votes
0
replies
1.9k
views
Job:
Postdoctoral researcher in Computational Metabolomics
xcms
metabolomics
population
metabolism
job
Job
updated 7.1 years ago by
Resume101
• 0 • written 7.3 years ago by
Johannes Rainer
★ 2.1k
0
votes
4
replies
2.3k
views
Intensity discrepancy between raw data and XCMS output
xcms
xcmsset
intensity
7.5 years ago
cpataki
• 0
0
votes
9
replies
5.4k
views
Error 'names' attribute must be the same length as the vector xcms
xcms
xcms3
mzxml
7.5 years ago
goh
• 0
3
votes
1
reply
1.4k
views
Does OnDiskMSnExp rewrite original data
xcms
msnbase
ondiskmsnexp
updated 7.5 years ago by
Laurent Gatto
1.6k • written 7.5 years ago by
goh
• 0
0
votes
1
reply
2.1k
views
XCMS for GC-MS
xcms
GC-MS
7.6 years ago
Joe
• 0
0
votes
4
replies
2.9k
views
Chromatographic peak detection failed for all files
xcms
7.7 years ago
yuchiu
• 0
0
votes
1
reply
2.2k
views
Metabolite identification package
xcms
massspectrometry
metabolomics
updated 7.8 years ago by
Johannes Rainer
★ 2.1k • written 7.8 years ago by
johnhamre3
• 0
2
votes
4
replies
2.0k
views
Using massifquant for peak detection of generic matrix data?
xcms
kalman
centwave
yamss
8.0 years ago
james.dalgleish
▴ 30
1
vote
2
replies
3.9k
views
ReadMSData problem with xcms
xcms
readmsdata
updated 8.3 years ago by
Johannes Rainer
★ 2.1k • written 8.3 years ago by
bhgyu
▴ 30
1
vote
5
replies
4.1k
views
'names' attribute [12] must be the same length as the vector [6]
R
xcms
vector
8.3 years ago
bhgyu
▴ 30
5
votes
7
replies
3.4k
views
XCMS obiwarp adjustRtime issue
xcms
obiwarp
adjustrtime
metabolomics
updated 8.4 years ago by
Johannes Rainer
★ 2.1k • written 8.4 years ago by
bhgyu
▴ 30
2
votes
1
reply
2.7k
views
Can XCMS search Metlin using MS/MS spectra and provide a similarity score?
xcms
updated 8.7 years ago by
wssdandan2009
• 0 • written 10.0 years ago by
dannel025
▴ 20
0
votes
2
replies
1.7k
views
Problem with mzR and/or Rcpp?
mzr rcpp
mzr
rcpp
XCMS
updated 8.7 years ago by
Laurent Gatto
1.6k • written 8.7 years ago by
elabiead
• 0
0
votes
0
replies
1.4k
views
xcmsFragments extract product fragment
xcms
xcms2
8.7 years ago
riccardo.romoli
• 0
1
vote
4
replies
2.6k
views
New to mass spec data analysis
data analysis
xcms
Tutorial
updated 16 months ago by
abhisek001
• 0 • written 8.9 years ago by
Dan_reichert
• 0
1
vote
1
reply
1.7k
views
xcms warning message
R
xcms
warning message
updated 9.2 years ago by
Johannes Rainer
★ 2.1k • written 9.2 years ago by
deepalikale2007
• 0
79 results • Page
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Comment: Can sample-level weights be used when analysing GSVA scores in limma?
by
A.Barden
▴ 20
Thanks both for this useful information.
Comment: Reproducibility of code in various Bioconductor versions
by
Gordon Smyth
53k
SNPlocs.Hsapiens.dbSNP155.GRCh38 is available for download from the same location as always. It has not changed since Bioc 3.20: Presumabl…
Comment: Changing multiple display parameters of a specific exon in GeneRegionTrack
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• 0
Similarly, for structural complexity in the [He777 Game][1] APK, having precise control over every detail is what makes a high-performance …
Answer: Issue loading and downloading Bioconductor 3.22 packages after update
by
strawberry3
• 0
Hi, thank you all for the advice. Using James's advice, I managed to install SNPlocs.Hsapiens.dbSNP155.GRCh38, but it took almost half an …
Answer: Issue loading and downloading Bioconductor 3.22 packages after update
by
James W. MacDonald
68k
As Robert and ATpoint have mentioned, you need to allow more time to download a large file like this. ``` > options(timeout = 5e5) > l…
Votes
Answer: Can sample-level weights be used when analysing GSVA scores in limma?
Answer: Can sample-level weights be used when analysing GSVA scores in limma?
Comment: Can sample-level weights be used when analysing GSVA scores in limma?
Answer: Issue loading and downloading Bioconductor 3.22 packages after update
Answer: Issue loading and downloading Bioconductor 3.22 packages after update
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