Request : Add Chinese Spring Wheat genome to BSgenome
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@fb1210e9
Last seen 5 weeks ago
France

Hello,

The team I am currently working with is studying chinese spring wheat (Triticum aestivum) and we would greatly benefit from a common package for both the base genome and its related annotation. However when trying to forge the BSgenome package, I get an error since no current genome is registered for wheat in Bioconductor. The reference genome is available here at URGI with the associated project page from NCBI if needed. Is it possible to add this genome on Bioconductor so that I can forge the package ?

Thanks in advance !

Have a nice day :)

Maxence

BSgenome • 128 views
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@herve-pages-1542
Last seen 4 hours ago
Seattle, WA, United States

Hi Maxence,

I registered the IWGSC CS RefSeq v2.1 assembly in GenomeInfoDb 1.32.2 (release) and 1.33.3 (devel). These new versions should become available via BiocManager::install() in the next couple of days.

Best,

H.

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