coseq does not find object "cap"
0
0
Entering edit mode
JaneDoe • 0
@a3d1cc8e
Last seen 20 months ago
Spain

I have run coseq on my gene expression matrix from RNAseq (15000 genes* 750 samples). I run the following:

runArcsin <- coseq(counts, K=2:3, model="kmeans", transformation="clr", 
meanFilterCutoff=200, iter=10,GaussianModel = "Gaussian_pk_Lk_I")

I am running this with Gaussian_pk_Lk_I because using the default gausian model did not work. Also i have specified K in restricted way just for testing.

The error I get is:

Error in h(simpleError(msg, call)) : 
error in evaluating the argument 'object' in selecting a method for function 'DDSEextract': object 'cap' not found

could you help?

coseq • 463 views
ADD COMMENT

Login before adding your answer.

Traffic: 941 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6