coseq does not find object "cap"
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JaneDoe • 0
@a3d1cc8e
Last seen 1 day ago
Spain

I have run coseq on my gene expression matrix from RNAseq (15000 genes* 750 samples). I run the following:

runArcsin <- coseq(counts, K=2:3, model="kmeans", transformation="clr", 
meanFilterCutoff=200, iter=10,GaussianModel = "Gaussian_pk_Lk_I")

I am running this with Gaussian_pk_Lk_I because using the default gausian model did not work. Also i have specified K in restricted way just for testing.

The error I get is:

Error in h(simpleError(msg, call)) : 
error in evaluating the argument 'object' in selecting a method for function 'DDSEextract': object 'cap' not found

could you help?

coseq • 63 views
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