Bioconductor Coseq

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coseq

2.5 years ago JaneDoe • 0

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coseq

updated 2.8 years ago by andrea.rau ▴ 80 • written 2.8 years ago by ajwijeratne1 • 0

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coseq RNAseq clustering

updated 4.9 years ago by andrea.rau ▴ 80 • written 4.9 years ago by minyaaa9058 ▴ 40

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coseq rna-seq

updated 5.8 years ago by andrea.rau ▴ 80 • written 5.8 years ago by varunorama • 0

4 results • Page 1 of 1

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Answer: Pre-filtering TPM kallisto for ssGSEA / DESeq2 by Michael Love 43k

I've seen in some papers ~1 TPM for saying something in mouse/human etc. was "minimally expressed". For an average length gene, 10 count…

Answer: Feature Counts - potential bug with outfile.jcounts by Gordon Smyth 52k

The behavior you have documented in not surprising and is explained in the featureCounts documentation. The first thing to understand is t…

Answer: Feature Counts -R XS Read Assignment Tag by Gordon Smyth 52k

No, featureCounts cannot change the XS tag to a different tag, because that would change the information in the output. featureCounts needs…

Comment: Margins for gene_set_enrichment_plot by Leonardo Collado Torres ★ 1.1k

Thanks! This one might be worth remaking with `ComplexHeatmap`. Similar to https://github.com/LieberInstitute/spatialLIBD/pull/91 that was …

Comment: DESeq2 - Comparing Comparisons by James W. MacDonald 67k

Full disclosure: I don't use `DESeq2`, and find the contrasts specification confusing. Because of that, I generally recommend using `result…

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Answer: Mapping Between GenBank ID's and Uniprot

Comment: What type of counts data to import for performing Isoform analysis in edgeR

A: Relations used in GO.db GOBPANCESTOR

Relations used in GO.db GOBPANCESTOR

Answer: RSubread output significantly different from bash Subread output

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